C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear RNA export factor 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000147206 NXF3 9606 - X:103075810-103093125 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000395065 NXF3-001 103075810-103093125 protein_coding
  ENST00000427570 NXF3-002 103077735-103083672 protein_coding
  ENST00000460791 NXF3-004 103082096-103083480 retained_intron
  ENST00000468528 NXF3-007 103076276-103079727 retained_intron
  ENST00000470724 NXF3-008 103077675-103080148 retained_intron
  ENST00000494300 NXF3-006 103079383-103080734 retained_intron
  ENST00000497850 NXF3-003 103075824-103081735 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395065ENST00000427570ENST00000460791ENST00000468528ENST00000470724ENST00000494300ENST00000497850
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395065 N/A N/A N/A N/A 0.026±0.00 0.104±0.06 0.095±0.00 1.163±0.92 N/A 0.588±0.55 0.051±0.02 7.531±2.33
ENST00000427570 0.096±0.00 N/A N/A N/A N/A N/A 0.191±0.00 N/A N/A N/A N/A N/A
ENST00000460791 N/A N/A 0.030±0.00 0.075±0.00 0.050±0.00 N/A N/A N/A N/A 0.135±0.00 N/A N/A
ENST00000468528 N/A 0.173±0.00 N/A N/A N/A 0.237±0.00 N/A N/A 0.125±0.00 0.096±0.00 0.259±0.00 6.226±0.00
ENST00000470724 N/A 0.030±0.00 0.020±0.00 0.174±0.00 N/A N/A N/A N/A 0.126±0.00 N/A 0.039±0.00 N/A
ENST00000494300 N/A N/A N/A 0.138±0.00 N/A N/A 0.294±0.00 N/A N/A 0.115±0.06 0.103±0.00 N/A
ENST00000497850 N/A 0.028±0.00 0.043±0.00 N/A 0.059±0.00 0.041±0.00 N/A N/A N/A 0.388±0.36 N/A 5.524±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037I CIL_00037I_0001 CGP X:103062651-103093125
CIL_000376 CIL_000376_0001 CGP X:103075810-103217246

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0006406 IDA:IEA mRNA export from nucleus
GO:0006810 IEA transport
GO:0016973 IEA poly(A)+ mRNA export from nucleus
GO:0042272 IDA nuclear RNA export factor complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055076 nxf1 nuclear RNA export factor 1 protein_coding Danio_rerio
ENSDARG00000086017 NXF1 (2 of 4) protein_coding Danio_rerio
ENSDARG00000089034 NXF1 (3 of 4) protein_coding Danio_rerio
ENSDARG00000095404 NXF1 (4 of 4) protein_coding Danio_rerio
ENSMUSG00000057000 Nxf3 nuclear RNA export factor 3 protein_coding Mus_musculus

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