C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003DU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000077257-ENSDARG00000040178 CGP 7955 21:28485046-28504565
GeneTranscriptPositionBiotype
ENSDARG00000040178 (havcr1)
hepatitis A virus cellular receptor 1 		ENSDART00000058774 (havcr1-001) 28496783-28504565 protein_coding
ENSDART00000133318 (havcr1-003) 28496953-28504561 protein_coding
ENSDART00000134238 (havcr1-002) 28496970-28504565 protein_coding
ENSDART00000134782 (havcr1-004) 28498034-28504524 protein_coding
ENSDART00000142625 (havcr1-005) 28501383-28504565 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0003DU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000145850-ENSG00000113249 CGP 9606 5:156919282-157059119
GeneTranscriptPositionBiotype
ENSG00000113249 (HAVCR1)
hepatitis A virus cellular receptor 1 		ENST00000339252 (HAVCR1-003) 157029516-157058476 protein_coding
ENST00000517644 (HAVCR1-005) 157029740-157049149 processed_transcript
ENST00000518745 (HAVCR1-004) 157052365-157058396 protein_coding
ENST00000522693 (HAVCR1-002) 157029413-157059119 protein_coding
ENST00000523175 (HAVCR1-001) 157029426-157058955 protein_coding
ENSG00000145850 (TIMD4)
T-cell immunoglobulin and mucin domain containing 4 		ENST00000274532 (TIMD4-001) 156919282-156963255 protein_coding
ENST00000406964 (TIMD4-003) 156919355-156935676 protein_coding
ENST00000407087 (TIMD4-002) 156919389-156963222 protein_coding
ENSG00000270560 (APOOP1)
apolipoprotein O pseudogene 1 		ENST00000604695 (APOOP1-001) 156924119-156924710 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003DU_0001ENSDARG00000040178ENSDART00000058774ENSDART00000133318ENSDART00000134238ENSDART00000134782ENSDART00000142625CIL_0003DU_0002ENSG00000113249ENST00000339252ENST00000517644ENST00000518745ENST00000522693ENST00000523175ENSG00000145850ENST00000274532ENST00000406964ENST00000407087ENSG00000270560ENST00000604695
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003DU_0001ENSDARG00000040178ENSDART00000058774ENSDART00000134238ENSDART00000134782ENSDART00000142625CIL_0003DU_0002ENSG00000113249ENST00000339252ENST00000517644ENST00000518745ENST00000522693ENST00000523175ENSG00000145850ENST00000274532ENST00000406964ENST00000407087ENSG00000270560ENST00000604695
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000040178 ENSDART00000058774 N/A N/A N/A 1.848±1.19 N/A N/A 9.600±0.77 8.294±1.03 N/A N/A 1.429±0.00 N/A N/A N/A
ENSDART00000133318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000134238 N/A N/A N/A 1.752±0.19 N/A N/A 4.553±1.64 5.851±0.00 0.351±0.00 N/A N/A N/A N/A N/A
ENSDART00000134782 N/A N/A N/A 0.912±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142625 N/A N/A N/A 3.136±1.50 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113249 ENST00000339252 0.012±0.00 0.027±0.00 0.282±0.00 0.026±0.00 0.010±0.00 N/A 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000517644 N/A N/A N/A N/A N/A 0.123±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518745 0.066±0.00 0.117±0.00 N/A 0.129±0.00 0.147±0.00 0.102±0.00 0.092±0.00 N/A N/A 0.050±0.00 0.124±0.00 N/A N/A 0.654±0.59
ENST00000522693 N/A N/A 0.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523175 N/A N/A 0.221±0.00 0.053±0.00 0.554±0.00 N/A 0.030±0.00 N/A 0.194±0.00 N/A N/A 0.025±0.00 N/A N/A
ENSG00000145850 ENST00000274532 N/A 2.092±0.00 0.901±0.00 N/A N/A 0.178±0.00 N/A 1.595±0.00 2.217±1.46 N/A N/A 0.073±0.00 3.599±0.32 N/A
ENST00000406964 N/A N/A N/A N/A 0.220±0.00 N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A 48.333±10.27
ENST00000407087 0.240±0.00 3.901±0.00 0.798±0.00 N/A 0.111±0.02 1.357±0.00 0.049±0.03 2.609±2.00 2.529±2.21 0.664±0.62 0.416±0.00 0.050±0.01 1.223±0.00 N/A
ENSG00000270560 ENST00000604695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.00

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