C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: hepatitis A virus cellular receptor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113249 HAVCR1 9606 - 5:157029413-157059119 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339252 HAVCR1-003 157029516-157058476 protein_coding
  ENST00000517644 HAVCR1-005 157029740-157049149 processed_transcript
  ENST00000518745 HAVCR1-004 157052365-157058396 protein_coding
  ENST00000522693 HAVCR1-002 157029413-157059119 protein_coding
  ENST00000523175 HAVCR1-001 157029426-157058955 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryTestisENST00000339252ENST00000517644ENST00000518745ENST00000522693ENST00000523175
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000339252 0.012±0.00 0.027±0.00 0.282±0.00 0.026±0.00 0.010±0.00 N/A 0.024±0.00 N/A N/A N/A N/A N/A
ENST00000517644 N/A N/A N/A N/A N/A 0.123±0.00 N/A N/A N/A N/A N/A N/A
ENST00000518745 0.066±0.00 0.117±0.00 N/A 0.129±0.00 0.147±0.00 0.102±0.00 0.092±0.00 N/A 0.050±0.00 0.124±0.00 N/A 0.654±0.59
ENST00000522693 N/A N/A 0.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523175 N/A N/A 0.221±0.00 0.053±0.00 0.554±0.00 N/A 0.030±0.00 0.194±0.00 N/A N/A 0.025±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DU CIL_0003DU_0002 CGP 5:156919282-157059119
CIL_000737 CIL_000737_0002 CGP 5:157029413-157142869

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001618 IEA virus receptor activity
GO:0005515 IEA protein binding
GO:0009615 IEA response to virus
GO:0016021 IEA integral component of membrane
GO:0016032 IEA viral process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040178 havcr1 hepatitis A virus cellular receptor 1 protein_coding Danio_rerio
ENSDARG00000091692 havcr2 hepatitis A virus cellular receptor 2 protein_coding Danio_rerio
ENSMUSG00000040405 Havcr1 hepatitis A virus cellular receptor 1 protein_coding Mus_musculus
ENSMUSG00000040413 Timd2 T cell immunoglobulin and mucin domain containing 2 protein_coding Mus_musculus
ENSMUSG00000046974 BC053393 cDNA sequence BC053393 protein_coding Mus_musculus
ENSMUSG00000078924 Gm12169 predicted gene 12169 protein_coding Mus_musculus

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