C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003RS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000002131-ENSDARG00000016526 CGP 7955 4:22817287-24151643
GeneTranscriptPositionBiotype
ENSDARG00000016526 (gata3)
GATA-binding protein 3 		ENSDART00000025153 (gata3-001) 24141643-24151643 protein_coding
ENSDART00000149971 (gata3-002) 24145608-24147869 retained_intron
CIL_0003RS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000002107-ENSMUSG00000015619 CGP 10090 2:6539694-9890034
GeneTranscriptPositionBiotype
ENSMUSG00000015619 (Gata3)
GATA binding protein 3 		ENSMUST00000102976 (Gata3-001) 9857078-9878600 protein_coding
ENSMUST00000130615 (Gata3-004) 9874702-9890034 protein_coding
ENSMUST00000142305 (Gata3-008) 9877890-9890002 processed_transcript
ENSMUST00000147533 (Gata3-006) 9877835-9887784 processed_transcript
ENSMUST00000151456 (Gata3-002) 9863183-9873672 processed_transcript
ENSMUST00000153509 (Gata3-003) 9874487-9875399 processed_transcript
ENSMUSG00000025783 (4930412O13Rik)
RIKEN cDNA 4930412O13 gene 		ENSMUST00000026889 (4930412O13Rik-001) 9881252-9883921 protein_coding
ENSMUST00000114919 (4930412O13Rik-002) 9882636-9883335 protein_coding
ENSMUSG00000062319 (Gm10115)
predicted gene 10115 		ENSMUST00000076071 (Gm10115-001) 6950453-6951680 sense_intronic
ENSMUSG00000065824 (Gm26315)
predicted gene, 26315 		ENSMUST00000083890 (Gm26315-201) 7076094-7076414 misc_RNA
ENSMUSG00000075538 (Gm10855)
predicted gene 10855 		ENSMUST00000100426 (Gm10855-001) 6932541-6935081 sense_intronic
ENSMUSG00000079602 (9230102O04Rik)
RIKEN cDNA 9230102O04 gene 		ENSMUST00000114915 (9230102O04Rik-001) 9883042-9883993 protein_coding
ENSMUST00000125091 (9230102O04Rik-002) 9883041-9889540 processed_transcript
ENSMUSG00000079603 (Gm13218)
predicted gene 13218 		ENSMUST00000128180 (Gm13218-001) 9591219-9597843 lincRNA
ENSMUSG00000079604 (Gm13219)
predicted gene 13219 		ENSMUST00000144870 (Gm13219-002) 9352490-9447676 lincRNA
ENSMUST00000152599 (Gm13219-003) 9352431-9410271 lincRNA
ENSMUST00000154223 (Gm13219-001) 9352520-9411632 lincRNA
ENSMUSG00000082953 (Gm13217)
predicted gene 13217 		ENSMUST00000120466 (Gm13217-001) 9041124-9042484 unprocessed_pseudogene
ENSMUSG00000083252 (Gm13210)
predicted gene 13210 		ENSMUST00000121483 (Gm13210-001) 7631076-7631348 processed_pseudogene
ENSMUSG00000083423 (Gm13221)
predicted gene 13221 		ENSMUST00000121712 (Gm13221-001) 9270080-9270509 processed_pseudogene
ENSMUSG00000084374 (Gm13255)
predicted gene 13255 		ENSMUST00000117255 (Gm13255-001) 8633937-8634483 processed_pseudogene
ENSMUSG00000085070 (Gm13211)
predicted gene 13211 		ENSMUST00000141649 (Gm13211-001) 7716151-7781408 lincRNA
ENSMUSG00000085580 (1700061F12Rik)
RIKEN cDNA 1700061F12 gene 		ENSMUST00000132414 (1700061F12Rik-001) 9189515-9197477 lincRNA
ENSMUSG00000087079 (Gm13389)
predicted gene 13389 		ENSMUST00000142774 (Gm13389-001) 6884270-6886924 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003RS_0001ENSDARG00000016526ENSDART00000025153ENSDART00000149971CIL_0003RS_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003RS_0001ENSDARG00000016526ENSDART00000025153CIL_0003RS_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000016526 ENSDART00000025153 N/A N/A N/A 13.924±11.81 N/A N/A 3.067±2.71 3.391±2.12 0.180±0.00 N/A 3.377±0.00 N/A N/A N/A
ENSDART00000149971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000015619 ENSMUST00000102976 0.361±0.19 7.023±0.20 33.508±2.58 4.090±4.66 19.929±14.87 0.360±0.09 0.093±0.03 4.823±1.01 0.173±0.10 3.456±0.25 0.082±0.02 0.387±0.18 9.200±4.90 N/A
ENSMUST00000130615 N/A N/A N/A N/A N/A 0.219±0.00 N/A N/A 0.169±0.05 N/A 0.074±0.00 0.587±0.00 N/A N/A
ENSMUST00000142305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.565±0.00 N/A N/A N/A
ENSMUST00000153509 N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000025783 ENSMUST00000026889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.339±6.91
ENSMUST00000114919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000062319 ENSMUST00000076071 0.111±0.00 0.389±0.00 0.260±0.10 0.440±0.46 0.169±0.02 N/A 0.089±0.02 N/A 0.020±0.01 0.151±0.06 N/A 0.197±0.23 0.025±0.01 0.047±0.01
ENSMUSG00000065824 ENSMUST00000083890 0.440±0.31 N/A 0.645±0.16 414.826±414.72 0.842±0.26 0.193±0.00 0.360±0.20 0.415±0.34 196.863±14.33 0.762±0.41 0.351±0.00 0.587±0.00 0.164±0.00 0.245±0.08
ENSMUSG00000075538 ENSMUST00000100426 0.085±0.06 N/A 0.201±0.02 0.121±0.04 0.076±0.01 0.087±0.03 0.131±0.01 0.017±0.00 0.011±0.01 0.086±0.02 0.012±0.00 0.106±0.09 0.036±0.01 0.023±0.01
ENSMUSG00000079602 ENSMUST00000114915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.369±0.00
ENSMUST00000125091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000079603 ENSMUST00000128180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.634±0.00 N/A
ENSMUSG00000079604 ENSMUST00000144870 N/A N/A 0.558±0.02 0.021±0.01 0.032±0.00 N/A N/A N/A 0.003±0.00 N/A N/A N/A 0.003±0.00 N/A
ENSMUST00000152599 N/A N/A 2.948±0.55 0.092±0.00 0.551±0.09 N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A 0.136±0.12
ENSMUST00000154223 N/A N/A 3.732±0.25 0.064±0.00 0.171±0.08 N/A N/A 0.053±0.02 N/A N/A N/A 0.009±0.00 N/A 0.058±0.00
ENSMUSG00000082953 ENSMUST00000120466 0.074±0.04 0.153±0.00 0.181±0.02 0.721±0.49 0.352±0.19 0.135±0.05 0.080±0.00 0.045±0.00 0.117±0.15 0.058±0.00 0.051±0.01 0.688±0.31 0.174±0.10 0.048±0.00
ENSMUSG00000083252 ENSMUST00000121483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.347±0.03
ENSMUSG00000083423 ENSMUST00000121712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00
ENSMUSG00000084374 ENSMUST00000117255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.059±0.00
ENSMUSG00000085070 ENSMUST00000141649 N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A 0.049±0.00 N/A N/A
ENSMUSG00000085580 ENSMUST00000132414 N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 26.222±1.93
ENSMUSG00000087079 ENSMUST00000142774 0.160±0.00 N/A 0.250±0.03 N/A 0.377±0.23 0.176±0.00 0.473±0.32 N/A 0.013±0.00 0.229±0.04 0.060±0.00 0.679±0.18 0.018±0.01 0.120±0.06

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