C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003YV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000018913-ENSDARG00000073859 CGP 7955 20:50099490-50200864
GeneTranscriptPositionBiotype
ENSDARG00000018913 (hmbox1b)
homeobox containing 1 b 		ENSDART00000008808 (hmbox1b-201) 50099490-50116350 protein_coding
ENSDARG00000073859 (kif13bb)
kinesin family member 13Bb 		ENSDART00000058858 (kif13bb-201) 50150433-50200864 protein_coding
ENSDARG00000083475 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000117431 (5S_rRNA.280-201) 50124897-50125007 rRNA

Danio rerio Ensembl (Zv9)

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CIL_0003YV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147421-ENSG00000197892 CGP 9606 8:28890394-29263124
GeneTranscriptPositionBiotype
ENSG00000147421 (HMBOX1)
homeobox containing 1 		ENST00000287701 (HMBOX1-002) 28890394-29052734 protein_coding
ENST00000355231 (HMBOX1-017) 28891316-29051898 protein_coding
ENST00000397358 (HMBOX1-001) 28890404-29053270 protein_coding
ENST00000403668 (HMBOX1-201) 28890708-29049385 protein_coding
ENST00000517386 (HMBOX1-010) 29046300-29050654 processed_transcript
ENST00000518080 (HMBOX1-009) 28970436-29018899 processed_transcript
ENST00000519047 (HMBOX1-005) 28890625-29051870 protein_coding
ENST00000519662 (HMBOX1-008) 28890395-28970373 protein_coding
ENST00000521516 (HMBOX1-004) 28890625-29051917 nonsense_mediated_decay
ENST00000522468 (HMBOX1-012) 29051018-29064764 nonsense_mediated_decay
ENST00000523613 (HMBOX1-003) 28890404-29049321 protein_coding
ENST00000524238 (HMBOX1-006) 28963863-29051549 protein_coding
ENST00000558662 (HMBOX1-014) 28890395-29049591 protein_coding
ENST00000560269 (HMBOX1-011) 28890924-28970435 processed_transcript
ENST00000560357 (HMBOX1-016) 28890410-28970672 retained_intron
ENST00000560599 (HMBOX1-015) 28890404-29049354 protein_coding
ENST00000561377 (HMBOX1-013) 29052517-29053759 processed_transcript
ENSG00000197892 (KIF13B)
kinesin family member 13B 		ENST00000521515 (KIF13B-004) 29145863-29263097 protein_coding
ENST00000522355 (KIF13B-005) 29145858-29263124 nonsense_mediated_decay
ENST00000522846 (KIF13B-002) 29189301-29263093 retained_intron
ENST00000523130 (KIF13B-006) 29070494-29108192 protein_coding
ENST00000523968 (KIF13B-003) 29150297-29263062 nonsense_mediated_decay
ENST00000524189 (KIF13B-001) 29067279-29263073 protein_coding
ENSG00000200719 (RNA5SP260)
RNA, 5S ribosomal pseudogene 260 		ENST00000363849 (RNA5SP260-201) 29048494-29048604 rRNA
ENSG00000253770 (HMGB1P23)
high mobility group box 1 pseudogene 23 		ENST00000518743 (HMGB1P23-001) 29218905-29219472 processed_pseudogene
ENSG00000259196 (HMBOX1-IT1)
HMBOX1 intronic transcript 1 (non-protein coding) 		ENST00000558292 (HMBOX1-IT1-001) 28949676-28955955 sense_intronic
ENSG00000259366 (CTD-2647L4.4)
 ENST00000560865 (CTD-2647L4.4-001) 29055935-29056685 sense_intronic
ENSG00000259607 (CTD-2647L4.5)
 ENST00000560714 (CTD-2647L4.5-001) 29067279-29068454 antisense
ENSG00000273710 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000622685 (Metazoa_SRP.1-241) 28915579-28915864 misc_RNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YV_0001ENSDARG00000018913ENSDART00000008808ENSDARG00000073859ENSDART00000058858ENSDARG00000083475ENSDART00000117431CIL_0003YV_0002ENSG00000147421ENST00000287701ENST00000355231ENST00000397358ENST00000403668ENST00000517386ENST00000518080ENST00000519047ENST00000519662ENST00000521516ENST00000522468ENST00000523613ENST00000524238ENST00000558662ENST00000560269ENST00000560357ENST00000560599ENST00000561377ENSG00000197892ENST00000521515ENST00000522355ENST00000522846ENST00000523130ENST00000523968ENST00000524189ENSG00000200719ENST00000363849ENSG00000253770ENST00000518743ENSG00000259196ENST00000558292ENSG00000259366ENST00000560865ENSG00000259607ENST00000560714ENSG00000273710ENST00000622685
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YV_0001ENSDARG00000018913ENSDART00000008808ENSDARG00000073859ENSDART00000058858ENSDARG00000083475ENSDART00000117431CIL_0003YV_0002ENSG00000147421ENST00000287701ENST00000355231ENST00000397358ENST00000403668ENST00000519047ENST00000521516ENST00000522468ENST00000523613ENST00000524238ENST00000558662ENST00000560357ENST00000560599ENSG00000197892ENST00000521515ENST00000524189ENSG00000200719ENST00000363849ENSG00000253770ENST00000518743ENSG00000259196ENST00000558292ENSG00000259366ENST00000560865ENSG00000259607ENST00000560714ENSG00000273710ENST00000622685
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000018913 ENSDART00000008808 N/A N/A N/A N/A N/A N/A 0.395±0.00 0.120±0.00 0.134±0.00 N/A 0.347±0.00 N/A N/A N/A
ENSDARG00000073859 ENSDART00000058858 N/A N/A N/A 0.224±0.17 N/A N/A 2.226±2.12 2.349±0.00 0.949±0.00 N/A 0.198±0.00 N/A N/A N/A
ENSDARG00000083475 ENSDART00000117431 N/A N/A N/A 334.660±310.48 N/A N/A 162.462±150.08 397.790±0.00 2.148±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000147421 ENST00000287701 N/A N/A N/A N/A 1.077±0.00 N/A 1.155±0.00 0.617±0.00 N/A N/A N/A 0.654±0.25 N/A N/A
ENST00000355231 N/A N/A N/A N/A 2.237±0.00 1.692±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397358 1.310±0.00 N/A N/A N/A N/A N/A N/A 1.485±0.16 N/A N/A N/A 1.040±0.00 N/A 2.412±0.68
ENST00000403668 N/A N/A N/A 3.083±0.00 N/A N/A 1.712±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000517386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.112±0.00 N/A N/A N/A
ENST00000519662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521516 N/A N/A N/A N/A N/A N/A N/A 0.940±0.00 N/A N/A N/A N/A N/A N/A
ENST00000522468 N/A N/A N/A N/A N/A N/A N/A N/A 2.529±0.00 N/A 1.401±0.00 10.494±0.00 N/A N/A
ENST00000523613 N/A N/A N/A 1.864±0.00 2.020±0.00 N/A 1.943±0.00 N/A N/A N/A N/A 2.341±0.00 N/A N/A
ENST00000524238 N/A N/A N/A N/A N/A N/A N/A 1.090±0.00 N/A N/A N/A N/A N/A N/A
ENST00000558662 N/A N/A N/A N/A 1.439±0.00 1.833±0.00 N/A N/A 2.965±0.00 3.946±0.00 N/A 1.257±0.00 N/A N/A
ENST00000560269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560357 N/A N/A N/A N/A N/A 5.249±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.936±0.00 N/A
ENST00000561377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197892 ENST00000521515 N/A N/A 3.598±0.00 1.509±0.00 N/A 5.075±0.00 0.714±0.00 1.549±0.00 N/A N/A N/A N/A N/A N/A
ENST00000522355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524189 6.004±0.00 1.652±0.00 1.480±0.00 5.271±3.24 2.952±1.44 4.790±0.00 1.083±0.94 3.932±1.22 1.224±0.11 1.763±0.58 N/A 3.053±0.91 1.408±0.27 3.065±1.62
ENSG00000200719 ENST00000363849 N/A N/A N/A N/A N/A N/A 0.229±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000253770 ENST00000518743 0.025±0.00 N/A 0.508±0.00 N/A 0.296±0.00 0.905±0.00 0.032±0.00 0.198±0.00 0.076±0.00 0.128±0.00 N/A 0.617±0.00 N/A N/A
ENSG00000259196 ENST00000558292 0.149±0.00 0.184±0.00 0.296±0.00 0.038±0.00 0.177±0.00 0.100±0.00 0.160±0.00 0.146±0.00 1.378±0.00 0.033±0.00 N/A 0.086±0.02 0.416±0.00 0.135±0.00
ENSG00000259366 ENST00000560865 N/A N/A N/A N/A 5.124±0.00 0.717±0.00 N/A 2.451±0.00 3.468±0.00 4.234±2.16 1.582±0.00 1.119±0.63 0.194±0.00 N/A
ENSG00000259607 ENST00000560714 N/A 5.441±0.00 N/A 27.452±0.00 7.712±0.00 13.789±0.00 N/A 22.167±0.00 12.737±0.00 8.844±0.00 2.058±0.00 9.663±0.00 N/A 11.122±0.00
ENSG00000273710 ENST00000622685 N/A 0.055±0.00 N/A N/A N/A 0.105±0.00 0.155±0.05 0.272±0.11 N/A N/A N/A N/A N/A 0.155±0.00

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