C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397358 HMBOX1-001 ENSG00000147421 9606 + 8:28890404-29053270 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeKidneyOvaryTestisENST00000397358
Transcript ID Adipose Kidney Ovary Testis
ENST00000397358 1.310±0.00 1.485±0.16 1.040±0.00 2.412±0.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YV CIL_0003YV_0002 CGP 8:28890394-29263124

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176128 Hmbox1-001 protein_coding Mus_musculus 0 2632
ENSMUST00000067843 Hmbox1-201 protein_coding Mus_musculus 0 2612
ENSMUST00000175905 Hmbox1-002 protein_coding Mus_musculus 0 1644
ENSMUST00000022544 Hmbox1-006 protein_coding Mus_musculus 0 1642
ENSMUST00000175744 Hmbox1-004 protein_coding Mus_musculus 0 1626
ENSMUST00000176832 Hmbox1-008 protein_coding Mus_musculus 0 1622
ENSMUST00000177326 Hmbox1-005 protein_coding Mus_musculus 0 1578
ENSMUST00000176489 Hmbox1-007 protein_coding Mus_musculus 0 1378
ENSMUST00000176657 Hmbox1-009 retained_intron Mus_musculus 0 902
ENSMUST00000176386 Hmbox1-003 processed_transcript Mus_musculus 0 383
ENSMUST00000184296 Gm27185-001 processed_pseudogene Mus_musculus 0 278

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