C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000147421 HMBOX1 9606 + 8:28890394-29064764 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000287701 HMBOX1-002 28890394-29052734 protein_coding
  ENST00000355231 HMBOX1-017 28891316-29051898 protein_coding
  ENST00000397358 HMBOX1-001 28890404-29053270 protein_coding
  ENST00000403668 HMBOX1-201 28890708-29049385 protein_coding
  ENST00000517386 HMBOX1-010 29046300-29050654 processed_transcript
  ENST00000518080 HMBOX1-009 28970436-29018899 processed_transcript
  ENST00000519047 HMBOX1-005 28890625-29051870 protein_coding
  ENST00000519662 HMBOX1-008 28890395-28970373 protein_coding
  ENST00000521516 HMBOX1-004 28890625-29051917 nonsense_mediated_decay
  ENST00000522468 HMBOX1-012 29051018-29064764 nonsense_mediated_decay
  ENST00000523613 HMBOX1-003 28890404-29049321 protein_coding
  ENST00000524238 HMBOX1-006 28963863-29051549 protein_coding
  ENST00000558662 HMBOX1-014 28890395-29049591 protein_coding
  ENST00000560269 HMBOX1-011 28890924-28970435 processed_transcript
  ENST00000560357 HMBOX1-016 28890410-28970672 retained_intron
  ENST00000560599 HMBOX1-015 28890404-29049354 protein_coding
  ENST00000561377 HMBOX1-013 29052517-29053759 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000287701ENST00000355231ENST00000397358ENST00000403668ENST00000519047ENST00000521516ENST00000522468ENST00000523613ENST00000524238ENST00000558662ENST00000560357ENST00000560599
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000287701 N/A N/A 1.077±0.00 N/A 1.155±0.00 0.617±0.00 N/A N/A N/A 0.654±0.25 N/A N/A
ENST00000355231 N/A N/A 2.237±0.00 1.692±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397358 1.310±0.00 N/A N/A N/A N/A 1.485±0.16 N/A N/A N/A 1.040±0.00 N/A 2.412±0.68
ENST00000403668 N/A 3.083±0.00 N/A N/A 1.712±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000519047 N/A N/A N/A N/A N/A N/A N/A N/A 2.112±0.00 N/A N/A N/A
ENST00000521516 N/A N/A N/A N/A N/A 0.940±0.00 N/A N/A N/A N/A N/A N/A
ENST00000522468 N/A N/A N/A N/A N/A N/A 2.529±0.00 N/A 1.401±0.00 10.494±0.00 N/A N/A
ENST00000523613 N/A 1.864±0.00 2.020±0.00 N/A 1.943±0.00 N/A N/A N/A N/A 2.341±0.00 N/A N/A
ENST00000524238 N/A N/A N/A N/A N/A 1.090±0.00 N/A N/A N/A N/A N/A N/A
ENST00000558662 N/A N/A 1.439±0.00 1.833±0.00 N/A N/A 2.965±0.00 3.946±0.00 N/A 1.257±0.00 N/A N/A
ENST00000560357 N/A N/A N/A 5.249±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.936±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YV CIL_0003YV_0002 CGP 8:28890394-29263124

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018913 hmbox1b homeobox containing 1 b protein_coding Danio_rerio
ENSDARG00000027082 hmbox1a homeobox containing 1a protein_coding Danio_rerio
ENSMUSG00000021972 Hmbox1 homeobox containing 1 protein_coding Mus_musculus

Loading