C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003Z0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000043177-ENSDARG00000043179 CGP 7955 8:46922776-46941584
GeneTranscriptPositionBiotype
ENSDARG00000043177 (lsm1)
LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) 		ENSDART00000063392 (lsm1-001) 46922776-46927854 protein_coding
ENSDARG00000043179 (bag4)
BCL2-associated athanogene 4 		ENSDART00000063396 (bag4-001) 46929632-46941584 protein_coding
CIL_0003Z0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000175324-ENSG00000156735 CGP 9606 8:38163321-38213301
GeneTranscriptPositionBiotype
ENSG00000156735 (BAG4)
BCL2-associated athanogene 4 		ENST00000287322 (BAG4-001) 38176599-38213301 protein_coding
ENST00000432471 (BAG4-002) 38176588-38210888 protein_coding
ENST00000521282 (BAG4-003) 38176533-38207741 processed_transcript
ENST00000521311 (BAG4-004) 38207593-38209557 protein_coding
ENSG00000175324 (LSM1)
LSM1, U6 small nuclear RNA associated 		ENST00000311351 (LSM1-001) 38163321-38176716 protein_coding
ENST00000520286 (LSM1-004) 38163428-38176730 processed_transcript
ENST00000520755 (LSM1-002) 38163335-38176674 protein_coding
ENST00000522515 (LSM1-003) 38163359-38176716 processed_transcript
ENST00000523511 (LSM1-005) 38163610-38176488 nonsense_mediated_decay
ENSG00000248585 (RP11-90P5.1)
 ENST00000503480 (RP11-90P5.1-001) 38201699-38204238 processed_pseudogene
ENSG00000253739 (U6)
U6 spliceosomal RNA 		ENST00000521915 (U6.1-202) 38166012-38166118 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003Z0_0001ENSDARG00000043177ENSDART00000063392ENSDARG00000043179ENSDART00000063396CIL_0003Z0_0002ENSG00000156735ENST00000287322ENST00000432471ENST00000521282ENST00000521311ENSG00000175324ENST00000311351ENST00000520286ENST00000520755ENST00000522515ENST00000523511ENSG00000248585ENST00000503480ENSG00000253739ENST00000521915
Region; Gene Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003Z0_0001ENSDARG00000043177ENSDART00000063392ENSDARG00000043179ENSDART00000063396CIL_0003Z0_0002ENSG00000156735ENST00000287322ENSG00000175324ENST00000311351ENST00000520286ENSG00000248585ENST00000503480ENSG00000253739ENST00000521915
Gene Transcript Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000043177 ENSDART00000063392 N/A N/A 15.262±9.25 N/A N/A 3.888±2.32 6.492±4.49 0.658±0.00 N/A 2.075±0.00 N/A N/A N/A
ENSDARG00000043179 ENSDART00000063396 N/A N/A 4.390±1.53 N/A N/A 3.326±1.46 8.430±1.55 1.489±0.00 N/A 1.372±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000156735 ENST00000287322 3.874±0.00 1.843±0.00 6.702±0.50 N/A 6.558±0.00 1.856±0.04 4.479±0.00 4.109±0.00 6.124±0.00 0.750±0.00 3.915±0.00 4.279±0.46 N/A
ENST00000432471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000175324 ENST00000311351 N/A 13.595±0.00 N/A 5.435±0.00 12.131±0.00 8.855±6.12 13.993±0.00 6.603±1.76 12.108±0.00 6.549±0.00 33.229±0.00 23.730±9.07 33.594±0.00
ENST00000520286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.882±0.00 22.611±0.00 N/A
ENST00000520755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000248585 ENST00000503480 0.014±0.00 0.069±0.00 0.150±0.14 N/A N/A 0.013±0.00 0.141±0.00 N/A N/A N/A 0.128±0.07 0.036±0.00 0.109±0.00
ENSG00000253739 ENST00000521915 1.052±0.00 0.444±0.00 N/A 0.443±0.00 N/A N/A 0.436±0.00 N/A N/A N/A N/A N/A N/A

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