C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM1, U6 small nuclear RNA associated
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000311351 LSM1-001 ENSG00000175324 9606 - 8:38163321-38176716 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311351
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311351 13.595±0.00 5.435±0.00 12.131±0.00 8.855±6.12 13.993±0.00 6.603±1.76 12.108±0.00 6.549±0.00 33.229±0.00 23.730±9.07 33.594±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NR CIL_0008NR_0001 VISTA 8:38140056-38746180
CIL_0003Z0 CIL_0003Z0_0002 CGP 8:38163321-38213301

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006397 IEA mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030529 IEA ribonucleoprotein complex
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IDA poly(A) RNA binding
GO:0071044 IMP histone mRNA catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117703 Gm15209-001 processed_pseudogene Mus_musculus 0 427

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