C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004B7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000151292-ENSG00000168916 CGP 9606 5:123512099-124748807
GeneTranscriptPositionBiotype
ENSG00000151292 (CSNK1G3)
casein kinase 1, gamma 3 		ENST00000345990 (CSNK1G3-201) 123512099-123617040 protein_coding
ENST00000360683 (CSNK1G3-002) 123545634-123617045 protein_coding
ENST00000361991 (CSNK1G3-001) 123545634-123615446 protein_coding
ENST00000508708 (CSNK1G3-007) 123512191-123545956 processed_transcript
ENST00000510842 (CSNK1G3-003) 123545417-123614853 protein_coding
ENST00000511130 (CSNK1G3-005) 123512260-123614455 protein_coding
ENST00000512718 (CSNK1G3-004) 123512260-123614560 protein_coding
ENST00000514131 (CSNK1G3-006) 123552965-123557564 retained_intron
ENST00000515322 (CSNK1G3-008) 123588425-123615017 protein_coding
ENST00000521364 (CSNK1G3-009) 123545415-123615455 protein_coding
ENSG00000168916 (ZNF608)
zinc finger protein 608 		ENST00000306315 (ZNF608-001) 124636917-124745425 protein_coding
ENST00000503896 (ZNF608-007) 124643511-124744367 processed_transcript
ENST00000504926 (ZNF608-002) 124636916-124744521 protein_coding
ENST00000505686 (ZNF608-003) 124637278-124745081 nonsense_mediated_decay
ENST00000509799 (ZNF608-004) 124648237-124748807 protein_coding
ENST00000511308 (ZNF608-009) 124666271-124701269 processed_transcript
ENST00000512940 (ZNF608-008) 124744656-124746074 processed_transcript
ENST00000513985 (ZNF608-006) 124636913-124644337 processed_transcript
ENST00000513986 (ZNF608-005) 124648263-124746627 protein_coding
ENST00000613878 (ZNF608-201) 124636917-124745112 protein_coding
ENSG00000235275 (KRT18P16)
keratin 18 pseudogene 16 		ENST00000510337 (KRT18P16-001) 123636110-123637403 processed_pseudogene
ENSG00000248296 (CTD-2308B18.3)
 ENST00000503145 (CTD-2308B18.3-001) 124492775-124536348 lincRNA
ENSG00000249112 (RP11-43D2.2)
 ENST00000515092 (RP11-43D2.2-001) 124707827-124710737 antisense
ENSG00000250862 (HMGB1P29)
high mobility group box 1 pseudogene 29 		ENST00000505659 (HMGB1P29-001) 124220579-124221077 processed_pseudogene
ENSG00000251456 (RP11-436H11.5)
 ENST00000507630 (RP11-436H11.5-001) 124734618-124735175 sense_intronic
ENSG00000251662 (CTC-369A16.3)
 ENST00000510853 (CTC-369A16.3-001) 124395947-124400655 lincRNA
ENSG00000253807 (LINC01170)
long intergenic non-protein coding RNA 1170 		ENST00000519703 (LINC01170-002) 124313649-124405079 lincRNA
ENST00000520192 (LINC01170-001) 124306230-124386255 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0004B7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000073563-ENSMUSG00000052713 CGP 10090 18:53862113-54990180
GeneTranscriptPositionBiotype
ENSMUSG00000052713 (Zfp608)
zinc finger protein 608 		ENSMUST00000064763 (Zfp608-201) 54888045-54990180 protein_coding
ENSMUSG00000069376 (Gm5507)
predicted gene 5507 		ENSMUST00000091897 (Gm5507-001) 53984321-53985328 processed_pseudogene
ENSMUSG00000073563 (Csnk1g3)
casein kinase 1, gamma 3 		ENSMUST00000069597 (Csnk1g3-201) 53862113-53955684 protein_coding
ENSMUSG00000096982 (Redrum)
Redrum, erythroid developmental long intergenic non-protein coding transcript 		ENSMUST00000181269 (Redrum-201) 54422295-54452840 lincRNA
ENSMUSG00000097707 (Gm26742)
predicted gene, 26742 		ENSMUST00000181829 (Gm26742-201) 54981435-54987689 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004B7_0001ENSG00000151292ENST00000345990ENST00000360683ENST00000361991ENST00000508708ENST00000510842ENST00000511130ENST00000512718ENST00000514131ENST00000515322ENST00000521364ENSG00000168916ENST00000306315ENST00000503896ENST00000504926ENST00000505686ENST00000509799ENST00000511308ENST00000512940ENST00000513985ENST00000513986ENST00000613878ENSG00000235275ENST00000510337ENSG00000248296ENST00000503145ENSG00000249112ENST00000515092ENSG00000250862ENST00000505659ENSG00000251456ENST00000507630ENSG00000251662ENST00000510853ENSG00000253807ENST00000519703ENST00000520192CIL_0004B7_0002ENSMUSG00000052713ENSMUST00000064763ENSMUSG00000069376ENSMUST00000091897ENSMUSG00000073563ENSMUST00000069597ENSMUSG00000096982ENSMUST00000181269ENSMUSG00000097707ENSMUST00000181829
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004B7_0001ENSG00000151292ENST00000345990ENST00000360683ENST00000361991ENST00000508708ENST00000510842ENST00000511130ENST00000521364ENSG00000168916ENST00000306315ENST00000504926ENST00000509799ENST00000513985ENST00000513986ENST00000613878ENSG00000235275ENST00000510337ENSG00000248296ENST00000503145ENSG00000249112ENST00000515092ENSG00000250862ENST00000505659ENSG00000251456ENST00000507630ENSG00000251662ENST00000510853ENSG00000253807ENST00000519703ENST00000520192CIL_0004B7_0002ENSMUSG00000052713ENSMUST00000064763ENSMUSG00000069376ENSMUST00000091897ENSMUSG00000073563ENSMUST00000069597ENSMUSG00000096982ENSMUST00000181269ENSMUSG00000097707ENSMUST00000181829
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000151292 ENST00000345990 N/A N/A N/A N/A N/A 1.535±0.00 0.872±0.00 N/A 1.255±0.00 N/A 0.043±0.00 1.496±0.61 0.854±0.27 0.952±0.00
ENST00000360683 N/A 0.515±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.367±0.38 0.537±0.00 2.528±0.00
ENST00000361991 1.802±0.00 N/A N/A 2.335±0.00 N/A 1.117±0.14 1.096±0.00 1.163±0.00 N/A N/A 0.443±0.00 3.004±0.00 1.966±0.00 5.412±0.00
ENST00000508708 N/A N/A 1.279±0.00 6.482±0.00 N/A 5.741±0.00 N/A N/A 9.147±0.00 N/A N/A N/A N/A N/A
ENST00000510842 N/A N/A N/A 5.737±0.00 6.699±0.00 2.985±0.00 3.273±0.00 4.973±0.00 5.969±0.00 7.562±0.00 N/A 3.859±0.00 N/A N/A
ENST00000511130 N/A N/A N/A N/A N/A N/A 1.332±0.00 N/A N/A N/A N/A 3.895±0.00 4.305±0.00 11.777±0.00
ENST00000512718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521364 1.793±0.00 N/A 1.357±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.641±0.31 N/A 2.052±0.00
ENSG00000168916 ENST00000306315 0.233±0.00 N/A N/A 0.738±0.00 N/A N/A N/A N/A N/A N/A N/A 0.446±0.00 N/A N/A
ENST00000503896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504926 0.399±0.00 0.953±0.00 0.857±0.00 1.227±0.69 0.691±0.00 1.085±0.00 0.433±0.24 1.387±0.00 0.107±0.00 0.944±0.00 1.830±0.00 1.396±0.79 0.700±0.50 7.068±3.18
ENST00000505686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509799 N/A N/A N/A N/A N/A N/A 0.188±0.00 N/A N/A N/A N/A 0.811±0.00 N/A N/A
ENST00000511308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513985 N/A N/A N/A 2.319±0.00 0.628±0.00 N/A N/A 0.838±0.00 0.295±0.00 N/A 0.239±0.00 N/A N/A N/A
ENST00000513986 N/A N/A 1.703±0.00 N/A N/A 1.714±0.00 N/A N/A N/A 2.047±0.00 N/A N/A N/A N/A
ENST00000613878 N/A N/A N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A N/A 0.541±0.00 0.183±0.00 N/A
ENSG00000235275 ENST00000510337 N/A N/A N/A N/A 0.020±0.00 N/A N/A 0.096±0.00 0.017±0.00 0.057±0.00 N/A N/A 0.022±0.00 0.024±0.00
ENSG00000248296 ENST00000503145 N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000249112 ENST00000515092 N/A 0.028±0.00 N/A 0.057±0.00 N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A 0.116±0.10
ENSG00000250862 ENST00000505659 N/A N/A N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A 0.089±0.00 N/A 0.059±0.00
ENSG00000251456 ENST00000507630 N/A N/A 0.410±0.00 0.032±0.00 0.317±0.00 N/A N/A N/A 0.332±0.00 2.442±0.00 N/A N/A N/A N/A
ENSG00000251662 ENST00000510853 N/A 0.044±0.00 N/A 0.091±0.00 N/A N/A 0.128±0.05 N/A N/A N/A N/A 0.059±0.00 N/A N/A
ENSG00000253807 ENST00000519703 N/A N/A N/A 0.242±0.00 N/A N/A 1.030±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000520192 N/A N/A N/A 0.405±0.00 N/A N/A 0.332±0.03 N/A N/A N/A 0.230±0.00 0.527±0.00 N/A 0.303±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000052713 ENSMUST00000064763 2.362±0.57 1.193±0.54 1.230±0.54 6.779±3.18 2.206±0.65 2.820±0.24 1.362±0.27 1.771±0.63 0.366±0.24 6.307±1.44 0.726±0.09 2.241±0.85 1.213±0.84 N/A
ENSMUSG00000069376 ENSMUST00000091897 0.270±0.18 0.112±0.06 0.714±0.67 0.456±0.50 0.630±0.65 0.111±0.07 0.269±0.11 0.192±0.12 0.242±0.38 0.102±0.05 0.242±0.11 0.196±0.11 0.163±0.07 0.040±0.02
ENSMUSG00000073563 ENSMUST00000069597 4.250±1.75 15.587±5.98 5.087±0.60 12.008±4.01 5.971±3.36 6.943±3.01 0.913±0.29 4.107±2.75 2.730±1.55 4.787±1.97 0.513±0.16 10.667±5.00 6.139±1.64 1.252±0.50
ENSMUSG00000096982 ENSMUST00000181269 N/A N/A N/A 0.042±0.03 N/A N/A 0.036±0.00 N/A 14.024±7.00 N/A N/A 0.014±0.00 0.286±0.21 0.037±0.00
ENSMUSG00000097707 ENSMUST00000181829 N/A N/A N/A N/A N/A N/A N/A N/A 0.077±0.01 N/A N/A N/A N/A N/A

Loading