C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004EX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101216-ENSG00000197457 CGP 9606 20:63587602-63653427
GeneTranscriptPositionBiotype
ENSG00000197457 (STMN3)
stathmin-like 3 		ENST00000370053 (STMN3-001) 63639708-63653427 protein_coding
ENST00000540534 (STMN3-201) 63639705-63652766 protein_coding
ENSG00000232442 (CTD-3184A7.4)
 ENST00000411579 (CTD-3184A7.4-002) 63627250-63628707 antisense
ENST00000449500 (CTD-3184A7.4-001) 63627227-63628824 antisense
CIL_0004EX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038705-ENSMUSG00000027581 CGP 10090 2:181251449-181314500
GeneTranscriptPositionBiotype
ENSMUSG00000027581 (Stmn3)
stathmin-like 3 		ENSMUST00000103045 (Stmn3-001) 181306459-181314500 protein_coding
ENSMUSG00000038705 (Gmeb2)
glucocorticoid modulatory element binding protein 2 		ENSMUST00000049032 (Gmeb2-001) 181251449-181288035 protein_coding
ENSMUST00000123148 (Gmeb2-006) 181254775-181256131 retained_intron
ENSMUST00000130475 (Gmeb2-005) 181255918-181287074 protein_coding
ENSMUST00000141003 (Gmeb2-004) 181255938-181288016 nonsense_mediated_decay
ENSMUST00000141110 (Gmeb2-002) 181253785-181278082 nonsense_mediated_decay
ENSMUST00000147665 (Gmeb2-003) 181265592-181288031 retained_intron
ENSMUSG00000084033 (Gm7645)
predicted gene 7645 		ENSMUST00000119008 (Gm7645-001) 181292148-181292935 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004EX_0001ENSG00000197457ENST00000370053ENST00000540534ENSG00000232442ENST00000411579ENST00000449500CIL_0004EX_0002ENSMUSG00000027581ENSMUST00000103045ENSMUSG00000038705ENSMUST00000049032ENSMUST00000123148ENSMUST00000130475ENSMUST00000141003ENSMUST00000141110ENSMUST00000147665ENSMUSG00000084033ENSMUST00000119008
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004EX_0001ENSG00000197457ENST00000370053ENST00000540534ENSG00000232442ENST00000411579ENST00000449500CIL_0004EX_0002ENSMUSG00000027581ENSMUST00000103045ENSMUSG00000038705ENSMUST00000049032ENSMUST00000141110ENSMUST00000147665ENSMUSG00000084033ENSMUST00000119008
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000197457 ENST00000370053 4.809±0.00 13.474±0.00 0.661±0.00 68.052±24.12 5.042±3.43 5.844±5.57 1.093±0.66 3.106±3.07 1.190±0.90 4.986±3.14 0.364±0.01 36.121±18.88 11.043±3.36 9.510±4.29
ENST00000540534 N/A N/A N/A N/A N/A N/A N/A 2.881±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000232442 ENST00000411579 0.756±0.00 4.671±0.00 N/A 1.637±0.00 1.738±1.39 0.924±0.02 0.345±0.10 2.034±0.81 0.472±0.04 5.477±0.00 1.620±0.66 3.320±1.12 1.161±0.38 4.781±3.85
ENST00000449500 0.293±0.00 N/A 1.739±0.00 1.375±0.01 1.031±0.00 0.663±0.00 0.615±0.00 N/A 0.436±0.00 0.744±0.65 0.721±0.00 1.948±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027581 ENSMUST00000103045 0.272±0.16 3.681±1.52 0.625±0.01 281.655±53.82 0.100±0.05 3.008±0.53 0.407±0.21 0.665±0.45 0.239±0.43 0.056±0.02 0.084±0.04 0.168±0.10 0.196±0.12 0.016±0.00
ENSMUSG00000038705 ENSMUST00000049032 5.874±2.01 1.960±0.22 7.470±0.99 11.992±4.86 5.267±2.67 5.594±2.58 2.439±0.60 3.397±0.49 5.845±4.46 3.450±0.61 1.920±0.61 4.870±1.84 5.096±0.72 2.119±0.76
ENSMUST00000123148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141110 N/A 9.360±1.36 N/A N/A 6.346±0.98 9.028±1.20 N/A 2.416±0.00 2.361±0.54 5.270±1.06 N/A 9.557±2.40 N/A N/A
ENSMUST00000147665 N/A 9.587±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.077±0.00 3.850±0.00
ENSMUSG00000084033 ENSMUST00000119008 0.484±0.26 0.207±0.11 0.200±0.07 0.443±0.28 0.856±0.28 0.537±0.13 0.366±0.19 0.336±0.10 0.228±0.11 1.047±0.06 0.152±0.06 0.662±0.38 0.441±0.26 0.207±0.05

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