C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stathmin-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370053 STMN3-001 ENSG00000197457 9606 - 20:63639708-63653427 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370053
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370053 4.809±0.00 13.474±0.00 0.661±0.00 68.052±24.12 5.042±3.43 5.844±5.57 1.093±0.66 3.106±3.07 1.190±0.90 4.986±3.14 0.364±0.01 36.121±18.88 11.043±3.36 9.510±4.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004EX CIL_0004EX_0001 CGP 20:63587602-63653427
CIL_0003U1 CIL_0003U1_0001 CGP 20:63639705-63696253

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0007399 TAS nervous system development
GO:0015631 IEA tubulin binding
GO:0019904 ISS protein domain specific binding
GO:0031110 IEA regulation of microtubule polymerization or depolymerization
GO:0031122 ISS cytoplasmic microtubule organization
GO:0031175 ISS neuron projection development
GO:0032314 ISS regulation of Rac GTPase activity
GO:0035021 ISS negative regulation of Rac protein signal transduction
GO:0042995 IEA cell projection
GO:0051493 ISS regulation of cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103045 Stmn3-001 protein_coding Mus_musculus 0 725

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