C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004GQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000069832-ENSDARG00000032102 CGP 7955 13:9195928-9216677
GeneTranscriptPositionBiotype
ENSDARG00000032102 (prdx3)
peroxiredoxin 3 		ENSDART00000041700 (prdx3-001) 9207633-9216677 protein_coding
ENSDART00000140504 (prdx3-003) 9207823-9210331 retained_intron
ENSDART00000141406 (prdx3-002) 9207714-9216677 protein_coding
ENSDARG00000069832 (sfxn4)
sideroflexin 4 		ENSDART00000101949 (sfxn4-001) 9195928-9207163 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0004GQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183605-ENSG00000165672 CGP 9606 10:119140767-119178833
GeneTranscriptPositionBiotype
ENSG00000165672 (PRDX3)
peroxiredoxin 3 		ENST00000298510 (PRDX3-001) 119167703-119178833 protein_coding
ENST00000463322 (PRDX3-002) 119173745-119174772 processed_transcript
ENST00000494433 (PRDX3-003) 119168069-119170988 processed_transcript
ENSG00000183605 (SFXN4)
sideroflexin 4 		ENST00000355697 (SFXN4-001) 119140913-119165667 protein_coding
ENST00000369131 (SFXN4-004) 119146290-119165563 protein_coding
ENST00000419372 (SFXN4-005) 119157669-119165542 protein_coding
ENST00000461438 (SFXN4-002) 119141256-119165654 processed_transcript
ENST00000462913 (SFXN4-003) 119158007-119164196 processed_transcript
ENST00000466218 (SFXN4-006) 119147778-119165623 processed_transcript
ENST00000484960 (SFXN4-008) 119140913-119155123 processed_transcript
ENST00000490417 (SFXN4-007) 119140767-119156756 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0004GQ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000063698-ENSMUSG00000024997 CGP 10090 19:60837277-60874556
GeneTranscriptPositionBiotype
ENSMUSG00000024997 (Prdx3)
peroxiredoxin 3 		ENSMUST00000025961 (Prdx3-001) 60864051-60874556 protein_coding
ENSMUSG00000063698 (Sfxn4)
sideroflexin 4 		ENSMUST00000080806 (Sfxn4-002) 60837277-60861427 nonsense_mediated_decay
ENSMUST00000124921 (Sfxn4-003) 60838758-60861424 nonsense_mediated_decay
ENSMUST00000135808 (Sfxn4-001) 60838748-60861479 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004GQ_0001ENSDARG00000032102ENSDART00000041700ENSDART00000140504ENSDART00000141406ENSDARG00000069832ENSDART00000101949CIL_0004GQ_0002ENSG00000165672ENST00000298510ENST00000463322ENST00000494433ENSG00000183605ENST00000355697ENST00000369131ENST00000419372ENST00000461438ENST00000462913ENST00000466218ENST00000484960ENST00000490417CIL_0004GQ_0003ENSMUSG00000024997ENSMUST00000025961ENSMUSG00000063698ENSMUST00000080806ENSMUST00000124921ENSMUST00000135808
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004GQ_0001ENSDARG00000032102ENSDART00000041700ENSDART00000141406ENSDARG00000069832ENSDART00000101949CIL_0004GQ_0002ENSG00000165672ENST00000298510ENST00000494433ENSG00000183605ENST00000355697ENST00000369131ENST00000461438ENST00000466218ENST00000484960ENST00000490417CIL_0004GQ_0003ENSMUSG00000024997ENSMUST00000025961ENSMUSG00000063698ENSMUST00000080806ENSMUST00000124921ENSMUST00000135808
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000032102 ENSDART00000041700 N/A N/A N/A 17.943±12.50 N/A N/A 93.988±5.95 24.823±0.00 3.660±0.00 N/A 61.556±0.00 N/A N/A N/A
ENSDART00000140504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141406 N/A N/A N/A 5.891±0.00 N/A N/A 35.830±8.30 26.904±4.02 0.679±0.00 N/A N/A N/A N/A N/A
ENSDARG00000069832 ENSDART00000101949 N/A N/A N/A 8.651±2.25 N/A N/A 8.014±5.82 2.242±1.74 0.438±0.00 N/A 6.059±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000165672 ENST00000298510 28.713±0.00 44.742±0.00 25.580±0.00 33.383±5.55 40.102±22.59 33.350±10.84 54.473±36.49 85.191±14.30 43.163±28.97 22.875±7.30 41.507±3.76 35.597±19.20 35.946±15.47 22.789±14.24
ENST00000463322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.747±0.00 N/A 1.691±0.00
ENSG00000183605 ENST00000355697 2.636±0.00 2.623±0.00 1.058±0.00 3.306±0.44 1.717±0.57 N/A 5.257±4.45 4.282±2.56 5.684±5.03 2.704±0.00 11.779±10.07 14.446±5.23 6.165±1.76 5.760±1.00
ENST00000369131 N/A N/A N/A N/A N/A 1.363±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.089±0.00 N/A N/A
ENST00000462913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466218 N/A N/A N/A N/A N/A N/A N/A 6.717±0.00 0.834±0.00 N/A N/A 2.088±0.00 N/A N/A
ENST00000484960 2.930±0.00 5.355±0.00 N/A 3.114±0.00 3.841±0.00 5.398±0.00 N/A 8.928±0.00 3.887±2.16 N/A 5.606±2.56 15.654±0.00 N/A 6.177±0.07
ENST00000490417 N/A N/A N/A N/A N/A 2.269±0.00 N/A N/A N/A 0.257±0.00 N/A 15.100±0.00 2.416±1.29 5.058±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024997 ENSMUST00000025961 121.122±15.04 532.567±194.04 68.640±12.25 18.730±8.40 155.202±9.79 84.964±8.48 216.715±11.13 191.158±10.33 146.163±43.33 49.838±1.35 102.288±6.36 105.053±27.48 39.731±27.95 15.157±7.17
ENSMUSG00000063698 ENSMUST00000080806 N/A 0.479±0.28 0.868±0.00 1.057±0.19 0.184±0.00 0.198±0.03 N/A N/A 0.175±0.09 N/A 0.133±0.02 0.936±0.44 0.102±0.00 0.082±0.00
ENSMUST00000124921 N/A N/A N/A N/A N/A 0.256±0.00 0.323±0.00 N/A 0.322±0.04 N/A N/A 0.820±0.30 0.138±0.00 0.356±0.00
ENSMUST00000135808 2.583±1.07 0.864±0.27 2.532±0.65 2.216±0.34 0.938±0.20 0.219±0.09 1.564±0.08 1.549±0.25 0.539±0.09 1.418±0.32 0.643±0.22 1.173±0.61 1.276±0.54 0.421±0.21

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