C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004JS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000094909-ENSDARG00000035175 CGP 7955 15:1269157-1431913
GeneTranscriptPositionBiotype
ENSDARG00000035175 (schip1)
schwannomin interacting protein 1 		ENSDART00000102125 (schip1-001) 1393017-1431913 protein_coding
ENSDART00000152285 (schip1-002) 1367549-1431913 protein_coding
ENSDARG00000094909 (IQCJ)
IQ motif containing J 		ENSDART00000144279 (IQCJ-201) 1269157-1271288 protein_coding
CIL_0004JS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000214216-ENSG00000151967 CGP 9606 3:158962928-159897360
GeneTranscriptPositionBiotype
ENSG00000151967 (SCHIP1)
schwannomin interacting protein 1 		ENST00000445224 (SCHIP1-004) 159839861-159897360 protein_coding
ENST00000461058 (SCHIP1-011) 159839938-159886376 retained_intron
ENST00000472483 (SCHIP1-014) 159840099-159888119 retained_intron
ENST00000475932 (SCHIP1-015) 159888792-159892157 retained_intron
ENST00000482804 (SCHIP1-005) 159852939-159897349 protein_coding
ENST00000482885 (SCHIP1-006) 159852992-159894723 retained_intron
ENST00000483730 (SCHIP1-013) 159840060-159846052 processed_transcript
ENST00000495954 (SCHIP1-012) 159839940-159897234 nonsense_mediated_decay
ENSG00000241211 (IQCJ-SCHIP1-AS1)
IQCJ-SCHIP1 readthrough antisense RNA 1 		ENST00000460574 (IQCJ-SCHIP1-AS1-001) 159765387-159768454 antisense
ENST00000488247 (IQCJ-SCHIP1-AS1-002) 159768317-159768612 antisense
ENSG00000243116 (RP11-564C24.1)
 ENST00000485389 (RP11-564C24.1-001) 159721524-159722401 processed_pseudogene
ENSG00000244249 (RP11-441M10.1)
 ENST00000462872 (RP11-441M10.1-001) 159386756-159387440 processed_pseudogene
ENSG00000252763 (RNU2-31P)
RNA, U2 small nuclear 31, pseudogene 		ENST00000516954 (RNU2-31P-201) 159808416-159808570 snRNA
CIL_0004JS_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051777-ENSMUSG00000027777 CGP 10090 3:67892220-68626481
GeneTranscriptPositionBiotype
ENSMUSG00000051777 (Iqcj)
IQ motif containing J 		ENSMUST00000063263 (Iqcj-201) 67892220-68056593 protein_coding
ENSMUST00000178976 (Iqcj-202) 68040729-68056593 protein_coding
ENSMUSG00000084617 (Gm22073)
predicted gene, 22073 		ENSMUST00000122668 (Gm22073-201) 68547520-68547708 snRNA
ENSMUSG00000098151 (Gm10292)
predicted gene 10292 		ENSMUST00000183142 (Gm10292-001) 68333197-68333777 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004JS_0001ENSDARG00000035175ENSDART00000102125ENSDART00000152285ENSDARG00000094909ENSDART00000144279CIL_0004JS_0002ENSG00000151967ENST00000445224ENST00000461058ENST00000472483ENST00000475932ENST00000482804ENST00000482885ENST00000483730ENST00000495954ENSG00000241211ENST00000460574ENST00000488247ENSG00000243116ENST00000485389ENSG00000244249ENST00000462872ENSG00000252763ENST00000516954CIL_0004JS_0003ENSMUSG00000051777ENSMUST00000063263ENSMUST00000178976ENSMUSG00000084617ENSMUST00000122668ENSMUSG00000098151ENSMUST00000183142
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004JS_0001ENSDARG00000035175ENSDART00000102125ENSDART00000152285ENSDARG00000094909ENSDART00000144279CIL_0004JS_0002ENSG00000151967ENST00000445224ENST00000475932ENST00000482804ENST00000482885ENSG00000241211ENST00000460574ENST00000488247ENSG00000243116ENST00000485389ENSG00000244249ENST00000462872ENSG00000252763ENST00000516954CIL_0004JS_0003ENSMUSG00000051777ENSMUST00000063263ENSMUST00000178976ENSMUSG00000084617ENSMUST00000122668ENSMUSG00000098151ENSMUST00000183142
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000035175 ENSDART00000102125 N/A N/A N/A 17.743±6.32 N/A N/A 2.684±2.76 0.321±0.28 0.178±0.00 N/A 2.506±0.00 N/A N/A N/A
ENSDART00000152285 N/A N/A N/A 9.887±4.66 N/A N/A 3.658±0.64 N/A 0.037±0.00 N/A 7.796±0.00 N/A N/A N/A
ENSDARG00000094909 ENSDART00000144279 N/A N/A N/A 5.815±0.00 N/A N/A 0.252±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000151967 ENST00000445224 N/A N/A N/A 49.708±32.63 N/A 5.600±0.00 N/A N/A N/A N/A 19.208±0.00 0.476±0.00 N/A 1.785±0.00
ENST00000461058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475932 N/A N/A N/A 252.484±0.00 N/A N/A N/A 5.504±0.00 N/A 40.433±0.00 79.487±0.00 N/A N/A N/A
ENST00000482804 1.326±0.00 N/A N/A N/A 1.991±0.00 N/A 16.576±9.66 1.200±0.00 N/A N/A 16.055±9.75 0.405±0.13 3.319±1.10 1.658±0.00
ENST00000482885 0.201±0.00 0.213±0.00 N/A N/A 0.182±0.00 0.120±0.00 N/A 0.130±0.00 N/A 0.584±0.00 N/A 0.116±0.04 N/A N/A
ENST00000483730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241211 ENST00000460574 0.056±0.00 0.118±0.00 N/A 0.242±0.00 0.176±0.00 0.166±0.00 0.093±0.00 0.090±0.00 N/A N/A 0.302±0.00 0.801±0.00 0.149±0.06 0.637±0.17
ENST00000488247 N/A N/A N/A N/A N/A 7.809±0.00 0.046±0.00 N/A N/A N/A N/A N/A N/A 0.280±0.15
ENSG00000243116 ENST00000485389 0.067±0.00 N/A N/A 0.057±0.00 N/A 0.053±0.00 0.033±0.01 N/A N/A N/A N/A N/A 0.078±0.00 0.038±0.03
ENSG00000244249 ENST00000462872 N/A N/A N/A 0.863±0.56 0.397±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252763 ENST00000516954 N/A N/A N/A N/A N/A N/A 0.266±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000051777 ENSMUST00000063263 N/A N/A N/A 0.572±0.27 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000178976 N/A N/A N/A N/A N/A 0.096±0.04 0.025±0.00 N/A N/A N/A N/A N/A 0.024±0.00 0.186±0.03
ENSMUSG00000084617 ENSMUST00000122668 N/A N/A N/A N/A N/A N/A N/A N/A 0.975±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000098151 ENSMUST00000183142 N/A N/A N/A 0.059±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.00

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