C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005H8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000060023-ENSDARG00000035970 CGP 7955 7:41598135-41892059
GeneTranscriptPositionBiotype
ENSDARG00000035970 (ptprn2)
protein tyrosine phosphatase, receptor type, N polypeptide 2 		ENSDART00000052222 (ptprn2-001) 41621095-41892059 protein_coding
ENSDART00000099049 (ptprn2-201) 41621216-41892051 protein_coding
ENSDART00000141254 (ptprn2-002) 41863328-41876624 processed_transcript
ENSDART00000145787 (ptprn2-003) 41866181-41870918 retained_intron
ENSDARG00000060023 (ncapg2)
non-SMC condensin II complex, subunit G2 		ENSDART00000084090 (ncapg2-201) 41598457-41620274 protein_coding
ENSDART00000084093 (ncapg2-202) 41598135-41619741 protein_coding
ENSDART00000148390 (ncapg2-001) 41605289-41619812 protein_coding
CIL_0005H8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042029-ENSMUSG00000056553 CGP 10090 12:116405402-117276849
GeneTranscriptPositionBiotype
ENSMUSG00000042029 (Ncapg2)
non-SMC condensin II complex, subunit G2 		ENSMUST00000084828 (Ncapg2-201) 116405402-116463531 protein_coding
ENSMUSG00000056553 (Ptprn2)
protein tyrosine phosphatase, receptor type, N polypeptide 2 		ENSMUST00000070733 (Ptprn2-002) 116485833-117276793 protein_coding
ENSMUST00000185505 (Ptprn2-003) 116485720-116773330 processed_transcript
ENSMUST00000189009 (Ptprn2-005) 116485729-117123467 processed_transcript
ENSMUST00000190247 (Ptprn2-001) 116485729-117276849 nonsense_mediated_decay
ENSMUST00000191106 (Ptprn2-004) 116485770-116844989 retained_intron
ENSMUSG00000099907 (RP23-393F10.2)
predicted gene 10421 		ENSMUST00000185746 (RP23-393F10.2-002) 117145372-117151269 retained_intron
ENSMUST00000186114 (RP23-393F10.2-003) 117151090-117151651 antisense
ENSMUST00000190266 (RP23-393F10.2-001) 117144530-117151215 antisense
ENSMUSG00000101236 (RP23-429J21.2)
predicted gene 6750 		ENSMUST00000189273 (RP23-429J21.2-001) 116507616-116507883 processed_pseudogene
ENSMUSG00000101814 (RP24-281B5.1)
predicted gene, 17807 		ENSMUST00000186869 (RP24-281B5.1-001) 116597253-116597550 processed_pseudogene
ENSMUSG00000101930 (RP23-393F10.3)
predicted gene 5441 		ENSMUST00000186454 (RP23-393F10.3-002) 117279435-117337022 antisense
ENSMUST00000190132 (RP23-393F10.3-001) 117234521-117337012 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005H8_0001ENSDARG00000035970ENSDART00000052222ENSDART00000099049ENSDART00000141254ENSDART00000145787ENSDARG00000060023ENSDART00000084090ENSDART00000084093ENSDART00000148390CIL_0005H8_0002ENSMUSG00000042029ENSMUST00000084828ENSMUSG00000056553ENSMUST00000070733ENSMUST00000185505ENSMUST00000189009ENSMUST00000190247ENSMUST00000191106ENSMUSG00000099907ENSMUST00000185746ENSMUST00000186114ENSMUST00000190266ENSMUSG00000101236ENSMUST00000189273ENSMUSG00000101814ENSMUST00000186869ENSMUSG00000101930ENSMUST00000186454ENSMUST00000190132
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005H8_0001ENSDARG00000035970ENSDART00000052222ENSDART00000099049ENSDART00000141254ENSDARG00000060023ENSDART00000084090ENSDART00000148390CIL_0005H8_0002ENSMUSG00000042029ENSMUST00000084828ENSMUSG00000056553ENSMUST00000070733ENSMUST00000185505ENSMUST00000189009ENSMUST00000190247ENSMUST00000191106ENSMUSG00000099907ENSMUST00000185746ENSMUST00000190266ENSMUSG00000101236ENSMUST00000189273ENSMUSG00000101814ENSMUST00000186869ENSMUSG00000101930ENSMUST00000186454
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000035970 ENSDART00000052222 N/A N/A N/A 30.725±22.50 N/A N/A N/A N/A N/A N/A 1.569±0.00 N/A N/A N/A
ENSDART00000099049 N/A N/A N/A 33.797±21.97 N/A N/A 0.306±0.35 0.291±0.18 0.011±0.00 N/A 1.706±0.00 N/A N/A N/A
ENSDART00000141254 N/A N/A N/A N/A N/A N/A 0.186±0.04 0.116±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000145787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000060023 ENSDART00000084090 N/A N/A N/A 0.202±0.09 N/A N/A 0.792±0.90 7.902±1.79 0.065±0.00 N/A 0.044±0.00 N/A N/A N/A
ENSDART00000084093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000148390 N/A N/A N/A N/A N/A N/A 0.235±0.00 N/A 0.057±0.00 N/A 0.153±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042029 ENSMUST00000084828 0.705±0.45 0.600±0.13 0.634±0.14 1.749±1.22 0.737±0.23 0.971±0.27 0.131±0.11 0.280±0.14 5.671±6.17 0.484±0.13 0.199±0.03 1.388±0.67 1.643±1.08 2.076±1.38
ENSMUSG00000056553 ENSMUST00000070733 0.050±0.01 1.934±0.71 N/A 42.004±37.16 0.151±0.06 6.129±2.25 0.120±0.03 0.355±0.10 0.053±0.01 0.449±0.16 0.017±0.00 0.232±0.11 0.528±0.46 0.122±0.02
ENSMUST00000185505 N/A 7.830±2.08 N/A N/A 0.087±0.03 N/A N/A N/A 0.022±0.00 N/A N/A 0.184±0.03 N/A 0.444±0.20
ENSMUST00000189009 N/A N/A N/A N/A 0.092±0.00 N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A
ENSMUST00000190247 N/A 5.305±1.03 N/A N/A 0.130±0.01 10.701±3.34 0.107±0.00 0.105±0.03 N/A 0.231±0.19 N/A 0.130±0.09 0.539±0.33 N/A
ENSMUST00000191106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00
ENSMUSG00000099907 ENSMUST00000185746 N/A 0.054±0.02 0.013±0.00 1.106±0.80 N/A 0.037±0.01 N/A N/A 0.015±0.00 0.282±0.12 N/A N/A 0.006±0.00 0.097±0.08
ENSMUST00000186114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190266 N/A N/A N/A 1.656±0.24 N/A N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 0.186±0.00
ENSMUSG00000101236 ENSMUST00000189273 N/A N/A 0.066±0.00 0.114±0.00 N/A N/A N/A N/A 0.311±0.26 N/A 0.298±0.00 2.383±0.00 0.301±0.26 N/A
ENSMUSG00000101814 ENSMUST00000186869 N/A N/A N/A 1.438±1.26 N/A N/A N/A N/A N/A N/A N/A N/A 0.507±0.00 N/A
ENSMUSG00000101930 ENSMUST00000186454 N/A N/A 0.003±0.00 N/A 0.036±0.00 0.022±0.00 0.006±0.00 N/A 0.003±0.00 0.014±0.00 N/A N/A 0.001±0.00 0.009±0.00
ENSMUST00000190132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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