C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006KZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000005872-ENSDARG00000094780 CGP 7955 24:43551498-43620225
GeneTranscriptPositionBiotype
ENSDARG00000005872 (arhgap28)
Rho GTPase activating protein 28 		ENSDART00000125591 (arhgap28-201) 43551498-43591420 protein_coding
ENSDARG00000094780 (L3MBTL4)
l(3)mbt-like 4 (Drosophila) 		ENSDART00000139565 (L3MBTL4-201) 43614248-43620225 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006KZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024043-ENSMUSG00000041565 CGP 10090 17:67842713-68777961
GeneTranscriptPositionBiotype
ENSMUSG00000024043 (Arhgap28)
Rho GTPase activating protein 28 		ENSMUST00000024840 (Arhgap28-001) 67842713-68004120 protein_coding
ENSMUST00000163865 (Arhgap28-006) 67845735-67901471 protein_coding
ENSMUST00000164647 (Arhgap28-003) 67845110-67950940 protein_coding
ENSMUST00000170581 (Arhgap28-004) 67868963-67896110 protein_coding
ENSMUST00000170813 (Arhgap28-005) 67857417-67873048 nonsense_mediated_decay
ENSMUSG00000041565 (L3mbtl4)
l(3)mbt-like 4 (Drosophila) 		ENSMUST00000093007 (L3mbtl4-201) 68273797-68777961 protein_coding
ENSMUST00000124543 (L3mbtl4-003) 68273797-68641569 protein_coding
ENSMUST00000139383 (L3mbtl4-002) 68273797-68630903 nonsense_mediated_decay
ENSMUST00000150573 (L3mbtl4-001) 68273797-68457858 retained_intron
ENSMUSG00000090224 (Gm15974)
predicted gene 15974 		ENSMUST00000159103 (Gm15974-001) 68371280-68371810 processed_pseudogene
ENSMUSG00000090955 (Gm17097)
predicted gene 17097 		ENSMUST00000166414 (Gm17097-001) 67850126-67851063 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006KZ_0001ENSDARG00000005872ENSDART00000125591ENSDARG00000094780ENSDART00000139565CIL_0006KZ_0002ENSMUSG00000024043ENSMUST00000024840ENSMUST00000163865ENSMUST00000164647ENSMUST00000170581ENSMUST00000170813ENSMUSG00000041565ENSMUST00000093007ENSMUST00000124543ENSMUST00000139383ENSMUST00000150573ENSMUSG00000090224ENSMUST00000159103ENSMUSG00000090955ENSMUST00000166414
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006KZ_0001ENSDARG00000005872ENSDART00000125591ENSDARG00000094780ENSDART00000139565CIL_0006KZ_0002ENSMUSG00000024043ENSMUST00000024840ENSMUST00000163865ENSMUST00000164647ENSMUST00000170581ENSMUSG00000041565ENSMUST00000093007ENSMUST00000124543ENSMUST00000139383ENSMUST00000150573ENSMUSG00000090224ENSMUST00000159103ENSMUSG00000090955ENSMUST00000166414
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000005872 ENSDART00000125591 N/A N/A N/A 1.775±0.68 N/A N/A 6.024±1.57 5.890±1.91 0.239±0.00 N/A 0.594±0.00 N/A N/A N/A
ENSDARG00000094780 ENSDART00000139565 N/A N/A N/A 7.968±0.00 N/A N/A 3.329±2.40 2.035±0.00 1.041±0.00 N/A 6.336±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024043 ENSMUST00000024840 3.808±2.73 5.204±3.75 3.209±0.91 1.595±1.28 1.635±0.56 1.277±0.26 0.899±0.17 1.542±0.35 0.306±0.23 5.073±0.61 0.111±0.02 12.725±6.08 4.346±1.52 0.286±0.15
ENSMUST00000163865 N/A N/A N/A 0.063±0.00 N/A N/A N/A N/A N/A N/A N/A 9.145±0.00 4.701±0.81 0.073±0.00
ENSMUST00000164647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.00 N/A N/A N/A
ENSMUST00000170581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.260±0.00
ENSMUST00000170813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041565 ENSMUST00000093007 0.064±0.00 N/A N/A 0.117±0.00 N/A 0.113±0.04 N/A 0.121±0.06 N/A N/A N/A 0.092±0.05 0.021±0.01 1.481±0.00
ENSMUST00000124543 0.167±0.00 N/A 0.040±0.02 N/A N/A 0.327±0.06 N/A 0.105±0.05 0.005±0.00 N/A N/A 0.156±0.00 0.050±0.03 1.303±0.59
ENSMUST00000139383 0.106±0.04 N/A N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A N/A 0.055±0.00 N/A N/A
ENSMUST00000150573 N/A 0.074±0.00 N/A N/A N/A N/A 0.024±0.00 N/A 0.004±0.00 N/A N/A 0.068±0.00 0.026±0.00 N/A
ENSMUSG00000090224 ENSMUST00000159103 0.118±0.00 N/A N/A 0.019±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090955 ENSMUST00000166414 0.147±0.04 0.234±0.12 0.315±0.04 0.075±0.04 0.142±0.05 0.255±0.16 0.107±0.04 0.105±0.08 0.034±0.02 0.203±0.12 0.078±0.00 1.304±0.67 0.235±0.08 N/A

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