C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006PM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000203907-ENSG00000080007 CGP 9606 6:73368555-73417569
GeneTranscriptPositionBiotype
ENSG00000080007 (DDX43)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 		ENST00000370336 (DDX43-001) 73394748-73417569 protein_coding
ENST00000464221 (DDX43-003) 73394894-73397994 retained_intron
ENST00000479773 (DDX43-002) 73406965-73414007 processed_transcript
ENSG00000164430 (MB21D1)
Mab-21 domain containing 1 		ENST00000370315 (MB21D1-002) 73423709-73452276 protein_coding
ENST00000370318 (MB21D1-001) 73413515-73452259 protein_coding
ENST00000459924 (MB21D1-003) 73439743-73445685 retained_intron
ENSG00000224221 (RPS6P8)
ribosomal protein S6 pseudogene 8 		ENST00000421830 (RPS6P8-001) 73391038-73391767 processed_pseudogene
ENSG00000235174 (RPL39P3)
ribosomal protein L39 pseudogene 3 		ENST00000424573 (RPL39P3-001) 73373108-73373263 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0006PM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032346-ENSMUSG00000070291 CGP 10090 9:78376109-78423587
GeneTranscriptPositionBiotype
ENSMUSG00000032346 (Ooep)
oocyte expressed protein 		ENSMUST00000034900 (Ooep-001) 78376109-78378725 protein_coding
ENSMUSG00000070291 (Ddx43)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 		ENSMUST00000113367 (Ddx43-001) 78395777-78423587 protein_coding
ENSMUSG00000083032 (Gm8087)
predicted gene 8087 		ENSMUST00000119091 (Gm8087-001) 78388901-78389467 processed_pseudogene
ENSMUSG00000090724 (4930542C12Rik)
RIKEN cDNA 4930542C12 gene 		ENSMUST00000171096 (4930542C12Rik-001) 78394956-78396158 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006PM_0001ENSG00000080007ENST00000370336ENST00000464221ENST00000479773ENSG00000164430ENST00000370315ENST00000370318ENST00000459924ENSG00000224221ENST00000421830ENSG00000235174ENST00000424573CIL_0006PM_0002ENSMUSG00000032346ENSMUST00000034900ENSMUSG00000070291ENSMUST00000113367ENSMUSG00000083032ENSMUST00000119091ENSMUSG00000090724ENSMUST00000171096
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006PM_0001ENSG00000080007ENST00000370336ENST00000464221ENST00000479773ENSG00000164430ENST00000370315ENST00000370318ENST00000459924ENSG00000224221ENST00000421830ENSG00000235174ENST00000424573CIL_0006PM_0002ENSMUSG00000032346ENSMUST00000034900ENSMUSG00000070291ENSMUST00000113367ENSMUSG00000083032ENSMUST00000119091ENSMUSG00000090724ENSMUST00000171096
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000080007 ENST00000370336 0.290±0.00 1.075±0.00 0.015±0.00 0.028±0.00 N/A N/A 0.103±0.00 0.109±0.00 0.182±0.11 0.423±0.00 0.090±0.00 N/A 1.074±0.41 12.525±0.51
ENST00000464221 N/A N/A N/A N/A N/A N/A N/A N/A 0.816±0.00 N/A N/A N/A N/A N/A
ENST00000479773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.319±0.00 N/A N/A N/A
ENSG00000164430 ENST00000370315 0.560±0.00 2.975±0.00 0.119±0.00 0.234±0.17 1.612±0.39 1.116±0.69 0.257±0.17 0.496±0.41 0.303±0.11 1.983±0.92 0.250±0.00 2.615±1.59 0.758±0.12 N/A
ENST00000370318 0.461±0.00 N/A N/A 0.070±0.00 N/A 0.328±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459924 N/A N/A N/A 0.170±0.00 N/A 0.621±0.00 0.163±0.00 0.559±0.00 0.722±0.00 N/A N/A N/A N/A N/A
ENSG00000224221 ENST00000421830 N/A N/A N/A 0.017±0.00 N/A N/A N/A 0.951±0.00 0.317±0.24 N/A N/A 0.218±0.16 0.059±0.00 0.176±0.00
ENSG00000235174 ENST00000424573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.582±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032346 ENSMUST00000034900 0.062±0.03 0.084±0.02 4.229±0.30 0.421±0.20 N/A 0.213±0.05 0.016±0.00 0.031±0.01 0.018±0.02 0.257±0.11 0.017±0.01 6.059±1.63 0.053±0.04 0.024±0.01
ENSMUSG00000070291 ENSMUST00000113367 0.077±0.00 0.130±0.05 N/A 0.112±0.02 0.238±0.15 0.399±0.22 0.021±0.00 0.025±0.00 0.022±0.01 0.080±0.05 0.014±0.00 0.156±0.13 0.162±0.06 4.137±1.98
ENSMUSG00000083032 ENSMUST00000119091 N/A N/A 0.060±0.00 0.019±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A
ENSMUSG00000090724 ENSMUST00000171096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.473±0.59

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