C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L39 pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424573 RPL39P3-001 ENSG00000235174 9606 - 6:73373108-73373263 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000424573
Transcript ID Ovary
ENST00000424573 17.582±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PM CIL_0006PM_0001 CGP 6:73368555-73417569

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121292 Rpl39l-002 protein_coding Mus_musculus 0 217
ENSMUST00000044103 Rpl39l-001 protein_coding Mus_musculus 0 217
ENSMUST00000142604 Rpl39-ps-002 processed_transcript Mus_musculus 0 200
ENSMUST00000115231 Rpl39-001 protein_coding Mus_musculus 0 200
ENSMUST00000146505 Rpl39-ps-001 transcribed_processed_pseudogene Mus_musculus 0 195
ENSMUST00000117602 Gm15148-001 processed_pseudogene Mus_musculus 0 191
ENSMUST00000121971 Gm12013-001 processed_pseudogene Mus_musculus 0 187
ENSMUST00000191066 RP23-127L14.1-001 processed_pseudogene Mus_musculus 4.06377e-44 180
ENSMUST00000118985 Gm14541-001 processed_pseudogene Mus_musculus 9.94922e-44 178
ENSMUST00000118637 Gm11694-001 processed_pseudogene Mus_musculus 8.00001e-41 169
ENSMUST00000121969 Gm11334-001 processed_pseudogene Mus_musculus 3e-40 167
ENSMUST00000119534 Gm15067-001 processed_pseudogene Mus_musculus 3e-40 167
ENSMUST00000138799 Rpl39-002 retained_intron Mus_musculus 2e-36 154

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