C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006Y5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000045658-ENSDARG00000015824 CGP 7955 4:11956992-11994610
GeneTranscriptPositionBiotype
ENSDARG00000015824 (lemd3)
LEM domain containing 3 		ENSDART00000013604 (lemd3-001) 11981688-11994610 protein_coding
ENSDART00000108552 (lemd3-201) 11980752-11994533 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0006Y5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051236-ENSMUSG00000048661 CGP 10090 10:120781096-120979332
GeneTranscriptPositionBiotype
ENSMUSG00000048661 (Lemd3)
LEM domain containing 3 		ENSMUST00000119093 (Lemd3-002) 120923852-120979332 protein_coding
ENSMUST00000119944 (Lemd3-001) 120923413-120979332 protein_coding
ENSMUSG00000051236 (Msrb3)
methionine sulfoxide reductase B3 		ENSMUST00000092143 (Msrb3-001) 120781096-120899101 protein_coding
ENSMUST00000130950 (Msrb3-003) 120783894-120871152 protein_coding
ENSMUST00000139961 (Msrb3-002) 120783752-120850468 processed_transcript
ENSMUSG00000082936 (Gm16166)
predicted gene 16166 		ENSMUST00000118291 (Gm16166-001) 120928186-120928972 processed_pseudogene
ENSMUSG00000086444 (Gm15961)
predicted gene 15961 		ENSMUST00000156090 (Gm15961-001) 120800677-120801794 sense_intronic
ENSMUSG00000086522 (Gm4473)
predicted gene 4473 		ENSMUST00000145987 (Gm4473-001) 120899157-120901888 antisense
ENSMUSG00000087480 (Gm15910)
predicted gene 15910 		ENSMUST00000127564 (Gm15910-001) 120857629-120863326 processed_transcript
ENSMUSG00000093030 (Gm23632)
predicted gene, 23632 		ENSMUST00000175289 (Gm23632-201) 120974301-120974425 miRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006Y5_0001ENSDARG00000015824ENSDART00000013604ENSDART00000108552CIL_0006Y5_0002ENSMUSG00000048661ENSMUST00000119093ENSMUST00000119944ENSMUSG00000051236ENSMUST00000092143ENSMUST00000130950ENSMUST00000139961ENSMUSG00000082936ENSMUST00000118291ENSMUSG00000086444ENSMUST00000156090ENSMUSG00000086522ENSMUST00000145987ENSMUSG00000087480ENSMUST00000127564ENSMUSG00000093030ENSMUST00000175289
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006Y5_0001ENSDARG00000015824ENSDART00000013604ENSDART00000108552CIL_0006Y5_0002ENSMUSG00000048661ENSMUST00000119093ENSMUST00000119944ENSMUSG00000051236ENSMUST00000092143ENSMUSG00000082936ENSMUST00000118291ENSMUSG00000086444ENSMUST00000156090ENSMUSG00000086522ENSMUST00000145987ENSMUSG00000087480ENSMUST00000127564ENSMUSG00000093030ENSMUST00000175289
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015824 ENSDART00000013604 N/A N/A N/A N/A N/A N/A N/A N/A 1.026±0.00 N/A N/A N/A N/A N/A
ENSDART00000108552 N/A N/A N/A 3.171±0.93 N/A N/A 2.282±1.07 4.806±1.29 0.629±0.00 N/A 0.303±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000048661 ENSMUST00000119093 1.947±0.83 2.306±0.68 N/A 6.273±0.00 2.194±1.64 4.091±1.46 1.193±0.36 1.135±0.42 0.889±0.51 3.134±0.53 N/A 5.460±0.95 5.088±0.50 3.116±0.61
ENSMUST00000119944 1.212±0.27 2.064±0.00 4.085±0.39 5.906±3.30 0.872±0.14 N/A 0.827±0.50 1.660±0.45 1.926±0.90 1.622±0.48 2.396±0.28 2.593±1.44 4.461±1.99 1.464±0.63
ENSMUSG00000051236 ENSMUST00000092143 25.977±7.15 40.780±13.41 58.860±11.43 1.347±0.09 13.394±7.50 11.165±2.24 22.538±5.42 5.397±0.43 2.273±0.73 27.933±1.46 40.770±3.12 19.471±10.74 5.752±3.19 11.816±2.66
ENSMUST00000130950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082936 ENSMUST00000118291 0.547±0.17 0.342±0.19 0.392±0.02 0.579±0.33 0.454±0.19 0.990±0.29 0.270±0.05 0.456±0.17 0.396±0.14 0.805±0.30 0.065±0.00 0.991±0.62 0.239±0.09 0.520±0.20
ENSMUSG00000086444 ENSMUST00000156090 N/A N/A N/A 0.460±0.00 N/A N/A N/A N/A N/A N/A 0.319±0.01 0.473±0.00 N/A 0.932±0.47
ENSMUSG00000086522 ENSMUST00000145987 0.885±0.48 0.543±0.15 1.935±0.22 0.098±0.06 0.267±0.12 1.334±0.56 0.526±0.10 0.120±0.09 0.093±0.05 0.415±0.15 0.171±0.13 1.027±0.43 0.367±0.35 1.780±0.46
ENSMUSG00000087480 ENSMUST00000127564 0.199±0.10 0.419±0.29 0.327±0.17 0.331±0.21 0.170±0.05 0.232±0.10 0.140±0.05 0.081±0.04 0.103±0.07 0.274±0.11 0.077±0.03 0.241±0.12 0.134±0.08 0.136±0.06
ENSMUSG00000093030 ENSMUST00000175289 N/A 1422.182±691.88 30.196±10.14 N/A 1159.270±0.00 1126.500±0.00 N/A 845.181±0.00 30.519±33.55 N/A N/A 2465.190±0.00 9.715±6.10 1774.890±0.00

Loading