C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006Y5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000045658-ENSDARG00000015824 CGP 7955 4:11956992-11994610
GeneTranscriptPositionBiotype
ENSDARG00000015824 (lemd3)
LEM domain containing 3 		ENSDART00000013604 (lemd3-001) 11981688-11994610 protein_coding
ENSDART00000108552 (lemd3-201) 11980752-11994533 protein_coding
CIL_0006Y5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051236-ENSMUSG00000048661 CGP 10090 10:120781096-120979332
GeneTranscriptPositionBiotype
ENSMUSG00000048661 (Lemd3)
LEM domain containing 3 		ENSMUST00000119093 (Lemd3-002) 120923852-120979332 protein_coding
ENSMUST00000119944 (Lemd3-001) 120923413-120979332 protein_coding
ENSMUSG00000051236 (Msrb3)
methionine sulfoxide reductase B3 		ENSMUST00000092143 (Msrb3-001) 120781096-120899101 protein_coding
ENSMUST00000130950 (Msrb3-003) 120783894-120871152 protein_coding
ENSMUST00000139961 (Msrb3-002) 120783752-120850468 processed_transcript
ENSMUSG00000082936 (Gm16166)
predicted gene 16166 		ENSMUST00000118291 (Gm16166-001) 120928186-120928972 processed_pseudogene
ENSMUSG00000086444 (Gm15961)
predicted gene 15961 		ENSMUST00000156090 (Gm15961-001) 120800677-120801794 sense_intronic
ENSMUSG00000086522 (Gm4473)
predicted gene 4473 		ENSMUST00000145987 (Gm4473-001) 120899157-120901888 antisense
ENSMUSG00000087480 (Gm15910)
predicted gene 15910 		ENSMUST00000127564 (Gm15910-001) 120857629-120863326 processed_transcript
ENSMUSG00000093030 (Gm23632)
predicted gene, 23632 		ENSMUST00000175289 (Gm23632-201) 120974301-120974425 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006Y5_0001ENSDARG00000015824ENSDART00000013604ENSDART00000108552CIL_0006Y5_0002ENSMUSG00000048661ENSMUST00000119093ENSMUST00000119944ENSMUSG00000051236ENSMUST00000092143ENSMUST00000130950ENSMUST00000139961ENSMUSG00000082936ENSMUST00000118291ENSMUSG00000086444ENSMUST00000156090ENSMUSG00000086522ENSMUST00000145987ENSMUSG00000087480ENSMUST00000127564ENSMUSG00000093030ENSMUST00000175289
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006Y5_0001ENSDARG00000015824ENSDART00000013604ENSDART00000108552CIL_0006Y5_0002ENSMUSG00000048661ENSMUST00000119093ENSMUST00000119944ENSMUSG00000051236ENSMUST00000092143ENSMUSG00000082936ENSMUST00000118291ENSMUSG00000086444ENSMUST00000156090ENSMUSG00000086522ENSMUST00000145987ENSMUSG00000087480ENSMUST00000127564ENSMUSG00000093030ENSMUST00000175289
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015824 ENSDART00000013604 N/A N/A N/A N/A N/A N/A N/A N/A 1.026±0.00 N/A N/A N/A N/A N/A
ENSDART00000108552 N/A N/A N/A 3.171±0.93 N/A N/A 2.282±1.07 4.806±1.29 0.629±0.00 N/A 0.303±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000048661 ENSMUST00000119093 1.947±0.83 2.306±0.68 N/A 6.273±0.00 2.194±1.64 4.091±1.46 1.193±0.36 1.135±0.42 0.889±0.51 3.134±0.53 N/A 5.460±0.95 5.088±0.50 3.116±0.61
ENSMUST00000119944 1.212±0.27 2.064±0.00 4.085±0.39 5.906±3.30 0.872±0.14 N/A 0.827±0.50 1.660±0.45 1.926±0.90 1.622±0.48 2.396±0.28 2.593±1.44 4.461±1.99 1.464±0.63
ENSMUSG00000051236 ENSMUST00000092143 25.977±7.15 40.780±13.41 58.860±11.43 1.347±0.09 13.394±7.50 11.165±2.24 22.538±5.42 5.397±0.43 2.273±0.73 27.933±1.46 40.770±3.12 19.471±10.74 5.752±3.19 11.816±2.66
ENSMUST00000130950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082936 ENSMUST00000118291 0.547±0.17 0.342±0.19 0.392±0.02 0.579±0.33 0.454±0.19 0.990±0.29 0.270±0.05 0.456±0.17 0.396±0.14 0.805±0.30 0.065±0.00 0.991±0.62 0.239±0.09 0.520±0.20
ENSMUSG00000086444 ENSMUST00000156090 N/A N/A N/A 0.460±0.00 N/A N/A N/A N/A N/A N/A 0.319±0.01 0.473±0.00 N/A 0.932±0.47
ENSMUSG00000086522 ENSMUST00000145987 0.885±0.48 0.543±0.15 1.935±0.22 0.098±0.06 0.267±0.12 1.334±0.56 0.526±0.10 0.120±0.09 0.093±0.05 0.415±0.15 0.171±0.13 1.027±0.43 0.367±0.35 1.780±0.46
ENSMUSG00000087480 ENSMUST00000127564 0.199±0.10 0.419±0.29 0.327±0.17 0.331±0.21 0.170±0.05 0.232±0.10 0.140±0.05 0.081±0.04 0.103±0.07 0.274±0.11 0.077±0.03 0.241±0.12 0.134±0.08 0.136±0.06
ENSMUSG00000093030 ENSMUST00000175289 N/A 1422.182±691.88 30.196±10.14 N/A 1159.270±0.00 1126.500±0.00 N/A 845.181±0.00 30.519±33.55 N/A N/A 2465.190±0.00 9.715±6.10 1774.890±0.00

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