C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000791_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163637-ENSG00000163638 CGP 9606 3:64093867-64688000
GeneTranscriptPositionBiotype
ENSG00000163637 (PRICKLE2)
prickle homolog 2 (Drosophila) 		ENST00000295902 (PRICKLE2-001) 64093867-64225455 protein_coding
ENST00000498162 (PRICKLE2-002) 64157310-64267979 protein_coding
ENST00000564377 (PRICKLE2-003) 64097522-64445382 protein_coding
ENST00000569824 (PRICKLE2-004) 64198784-64445476 protein_coding
ENSG00000163638 (ADAMTS9)
ADAM metallopeptidase with thrombospondin type 1 motif, 9 		ENST00000295903 (ADAMTS9-003) 64515813-64687679 protein_coding
ENST00000459780 (ADAMTS9-002) 64649942-64687990 protein_coding
ENST00000467119 (ADAMTS9-009) 64650902-64654679 retained_intron
ENST00000467257 (ADAMTS9-010) 64516915-64539217 nonsense_mediated_decay
ENST00000475557 (ADAMTS9-004) 64614858-64687667 retained_intron
ENST00000477180 (ADAMTS9-007) 64515657-64522511 retained_intron
ENST00000481060 (ADAMTS9-006) 64521481-64616150 protein_coding
ENST00000482490 (ADAMTS9-005) 64550149-64686610 retained_intron
ENST00000494004 (ADAMTS9-008) 64654390-64656044 retained_intron
ENST00000498707 (ADAMTS9-001) 64515654-64688000 protein_coding
ENSG00000212340 (RNU6-739P)
RNA, U6 small nuclear 739, pseudogene 		ENST00000391038 (RNU6-739P-201) 64511755-64511857 snRNA
ENSG00000239926 (PRDX3P4)
peroxiredoxin 3 pseudogene 4 		ENST00000470828 (PRDX3P4-001) 64174401-64175147 processed_pseudogene
ENSG00000241101 (PRICKLE2-AS2)
PRICKLE2 antisense RNA 2 		ENST00000484703 (PRICKLE2-AS2-001) 64103470-64106056 antisense
ENSG00000241111 (PRICKLE2-AS1)
PRICKLE2 antisense RNA 1 		ENST00000482609 (PRICKLE2-AS1-001) 64067964-64103131 antisense
ENSG00000241684 (ADAMTS9-AS2)
ADAMTS9 antisense RNA 2 		ENST00000460833 (ADAMTS9-AS2-003) 64684909-64802725 antisense
ENST00000474768 (ADAMTS9-AS2-002) 64685104-64975536 antisense
ENST00000481312 (ADAMTS9-AS2-005) 64685128-65011468 antisense
ENST00000485174 (ADAMTS9-AS2-004) 64685104-64743438 antisense
CIL_000791_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030020-ENSMUSG00000030022 CGP 10090 6:92370892-92943492
GeneTranscriptPositionBiotype
ENSMUSG00000030020 (Prickle2)
prickle homolog 2 (Drosophila) 		ENSMUST00000032093 (Prickle2-201) 92370892-92706145 protein_coding
ENSMUST00000113445 (Prickle2-002) 92375384-92481392 protein_coding
ENSMUST00000113446 (Prickle2-003) 92370910-92534861 protein_coding
ENSMUST00000113447 (Prickle2-001) 92370908-92567366 protein_coding
ENSMUSG00000030022 (Adamts9)
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9 		ENSMUST00000113438 (Adamts9-001) 92772699-92943492 protein_coding
ENSMUST00000125490 (Adamts9-002) 92793010-92860145 retained_intron
ENSMUST00000130314 (Adamts9-003) 92845594-92860155 retained_intron
ENSMUST00000136751 (Adamts9-004) 92926231-92943492 processed_transcript
ENSMUST00000167391 (Adamts9-201) 92772702-92901441 protein_coding
ENSMUSG00000048636 (A730049H05Rik)
RIKEN cDNA A730049H05 gene 		ENSMUST00000057977 (A730049H05Rik-001) 92816478-92843465 protein_coding
ENSMUST00000133858 (A730049H05Rik-002) 92827632-92847174 processed_transcript
ENSMUSG00000079462 (Gm15737)
predicted gene 15737 		ENSMUST00000113434 (Gm15737-001) 92869357-92884411 protein_coding
ENSMUSG00000097462 (9530026P05Rik)
RIKEN cDNA 9530026P05 gene 		ENSMUST00000181121 (9530026P05Rik-201) 92940369-93272889 lincRNA
ENSMUST00000181145 (9530026P05Rik-202) 92940582-93145673 lincRNA
ENSMUST00000181840 (9530026P05Rik-203) 92940582-93111749 lincRNA
ENSMUSG00000098130 (Gm17797)
predicted gene, 17797 		ENSMUST00000182175 (Gm17797-001) 92561777-92562773 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000791_0001ENSG00000163637ENST00000295902ENST00000498162ENST00000564377ENST00000569824ENSG00000163638ENST00000295903ENST00000459780ENST00000467119ENST00000467257ENST00000475557ENST00000477180ENST00000481060ENST00000482490ENST00000494004ENST00000498707ENSG00000212340ENST00000391038ENSG00000239926ENST00000470828ENSG00000241101ENST00000484703ENSG00000241111ENST00000482609ENSG00000241684ENST00000460833ENST00000474768ENST00000481312ENST00000485174CIL_000791_0002ENSMUSG00000030020ENSMUST00000032093ENSMUST00000113445ENSMUST00000113446ENSMUST00000113447ENSMUSG00000030022ENSMUST00000113438ENSMUST00000125490ENSMUST00000130314ENSMUST00000136751ENSMUST00000167391ENSMUSG00000048636ENSMUST00000057977ENSMUST00000133858ENSMUSG00000079462ENSMUST00000113434ENSMUSG00000097462ENSMUST00000181121ENSMUST00000181145ENSMUST00000181840ENSMUSG00000098130ENSMUST00000182175
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000791_0001ENSG00000163637ENST00000295902ENST00000564377ENSG00000163638ENST00000295903ENST00000459780ENST00000475557ENST00000477180ENST00000481060ENST00000482490ENST00000498707ENSG00000212340ENST00000391038ENSG00000239926ENST00000470828ENSG00000241101ENST00000484703ENSG00000241111ENST00000482609ENSG00000241684ENST00000460833ENST00000474768ENST00000481312CIL_000791_0002ENSMUSG00000030020ENSMUST00000032093ENSMUST00000113445ENSMUST00000113446ENSMUST00000113447ENSMUSG00000030022ENSMUST00000113438ENSMUST00000125490ENSMUST00000130314ENSMUST00000136751ENSMUST00000167391ENSMUSG00000048636ENSMUST00000057977ENSMUST00000133858ENSMUSG00000079462ENSMUST00000113434ENSMUSG00000097462ENSMUST00000181121ENSMUST00000181145ENSMUST00000181840ENSMUSG00000098130ENSMUST00000182175
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163637 ENST00000295902 N/A 0.342±0.00 0.649±0.00 4.211±2.68 N/A N/A 0.497±0.33 N/A N/A N/A N/A 0.516±0.00 N/A N/A
ENST00000498162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564377 N/A N/A N/A N/A 1.417±0.00 1.918±0.00 N/A N/A 5.224±0.00 N/A N/A 1.140±0.00 N/A N/A
ENST00000569824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163638 ENST00000295903 14.723±0.00 4.585±0.00 N/A 0.880±0.00 1.789±0.50 8.143±0.00 1.516±0.00 5.537±0.00 0.094±0.00 8.327±0.00 0.851±0.21 0.974±0.19 2.939±1.73 0.455±0.00
ENST00000459780 N/A N/A N/A N/A N/A N/A 0.598±0.00 N/A 4.704±0.00 N/A N/A 3.233±0.00 N/A N/A
ENST00000467119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475557 N/A N/A N/A N/A N/A 0.720±0.00 N/A N/A 6.024±0.00 3.068±0.00 1.283±0.00 N/A N/A N/A
ENST00000477180 N/A 5.502±0.00 N/A N/A 1.667±0.00 N/A N/A N/A N/A N/A N/A 7.483±0.00 N/A N/A
ENST00000481060 N/A 5.724±0.00 N/A N/A 1.537±0.00 N/A 1.638±0.00 0.688±0.00 2.218±1.98 N/A 0.836±0.00 0.936±0.00 5.849±3.18 0.403±0.00
ENST00000482490 N/A N/A N/A 0.286±0.00 N/A N/A N/A N/A 2.698±0.00 N/A N/A 1.700±0.00 N/A N/A
ENST00000494004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498707 8.777±0.00 N/A N/A 1.532±0.00 N/A 19.805±0.00 1.607±0.00 N/A 0.275±0.00 14.683±0.00 0.844±0.00 2.997±1.10 3.308±1.15 0.490±0.00
ENSG00000212340 ENST00000391038 N/A N/A N/A N/A 0.421±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000239926 ENST00000470828 0.016±0.00 0.192±0.00 0.891±0.00 0.423±0.31 1.291±0.89 0.432±0.07 0.374±0.26 0.685±0.59 N/A 0.150±0.00 0.124±0.00 0.689±0.91 0.050±0.00 N/A
ENSG00000241101 ENST00000484703 0.060±0.00 N/A N/A N/A 0.447±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.16
ENSG00000241111 ENST00000482609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 N/A N/A 0.489±0.00
ENSG00000241684 ENST00000460833 0.062±0.00 0.115±0.00 1.965±0.00 0.050±0.00 N/A 0.187±0.00 0.066±0.04 0.058±0.01 N/A 0.625±0.00 N/A 0.541±0.53 N/A 0.084±0.00
ENST00000474768 0.091±0.00 0.224±0.00 N/A 0.135±0.06 0.591±0.49 1.008±0.39 0.206±0.10 0.125±0.00 1.616±1.57 0.979±0.00 0.496±0.34 1.315±0.68 0.168±0.09 0.125±0.00
ENST00000481312 0.320±0.00 0.234±0.00 4.070±0.00 0.272±0.00 0.517±0.00 0.789±0.00 0.256±0.00 0.373±0.16 2.587±2.57 1.071±0.00 0.169±0.06 2.394±2.08 0.197±0.12 0.788±0.08
ENST00000485174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030020 ENSMUST00000032093 0.152±0.00 0.491±0.18 N/A 3.400±2.26 0.466±0.23 1.154±0.44 N/A 0.324±0.02 0.064±0.00 2.494±0.45 N/A 0.778±0.19 0.146±0.09 0.133±0.03
ENSMUST00000113445 1.786±1.36 0.675±0.24 N/A N/A 0.483±0.12 0.967±0.24 0.400±0.10 0.428±0.09 0.155±0.01 4.852±1.12 N/A 1.845±0.44 N/A 0.445±0.17
ENSMUST00000113446 2.614±1.87 0.845±0.26 3.811±0.37 N/A 0.740±0.39 0.999±0.32 0.323±0.15 0.282±0.08 0.091±0.04 2.614±0.47 0.154±0.00 1.863±0.89 0.329±0.17 0.142±0.00
ENSMUST00000113447 0.701±0.00 N/A N/A 9.095±0.00 0.893±0.00 0.243±0.00 0.446±0.18 0.346±0.06 0.179±0.08 N/A 0.280±0.04 1.370±0.81 0.275±0.19 N/A
ENSMUSG00000030022 ENSMUST00000113438 3.038±1.17 0.553±0.25 1.904±0.45 0.498±0.30 0.813±0.38 0.157±0.03 1.493±0.67 1.261±0.17 0.390±0.16 2.096±0.62 0.336±0.14 4.294±2.80 4.128±2.00 0.140±0.05
ENSMUST00000125490 2.656±0.23 1.707±0.58 N/A N/A 1.023±0.23 0.479±0.17 N/A 1.451±0.18 0.132±0.00 1.772±0.20 N/A 3.813±0.65 N/A N/A
ENSMUST00000130314 N/A N/A N/A N/A N/A N/A N/A N/A 0.135±0.00 N/A N/A N/A N/A N/A
ENSMUST00000136751 N/A 0.999±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167391 1.499±0.10 0.682±0.19 1.876±0.40 0.499±0.12 0.944±0.31 0.354±0.16 0.934±0.59 0.818±0.25 0.321±0.16 1.055±0.43 0.325±0.11 2.234±0.51 2.152±1.17 0.750±0.00
ENSMUSG00000048636 ENSMUST00000057977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.189±0.09 N/A N/A
ENSMUST00000133858 N/A N/A N/A N/A N/A N/A N/A 1.738±0.24 N/A N/A N/A 5.020±0.16 N/A N/A
ENSMUSG00000079462 ENSMUST00000113434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.171±0.04 N/A N/A N/A
ENSMUSG00000097462 ENSMUST00000181121 N/A 0.891±0.00 0.882±0.00 0.287±0.36 0.252±0.05 0.182±0.08 0.177±0.00 N/A 0.058±0.05 N/A 0.171±0.03 0.757±0.68 0.055±0.04 0.058±0.05
ENSMUST00000181145 0.292±0.08 N/A N/A 0.023±0.02 0.208±0.00 0.103±0.00 N/A N/A 0.026±0.02 N/A 0.060±0.02 0.179±0.07 0.011±0.01 0.017±0.01
ENSMUST00000181840 1.192±0.22 3.109±1.26 N/A 0.078±0.06 1.195±0.61 0.790±0.28 0.610±0.08 N/A 0.170±0.13 N/A 0.227±0.07 1.242±0.70 0.163±0.11 0.082±0.02
ENSMUSG00000098130 ENSMUST00000182175 0.293±0.03 N/A 0.097±0.01 0.404±0.35 0.099±0.09 0.096±0.00 0.102±0.03 N/A 0.006±0.00 0.800±0.28 N/A 0.191±0.13 0.060±0.00 0.380±0.00

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