C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007GE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000097030-ENSDARG00000078456 CGP 7955 21:44444619-44454682
GeneTranscriptPositionBiotype
ENSDARG00000078456 (brcc3)
BRCA1/BRCA2-containing complex, subunit 3 		ENSDART00000108554 (brcc3-201) 44445969-44454682 protein_coding
ENSDART00000155122 (brcc3-001) 44445721-44454501 protein_coding
ENSDARG00000097030 (cmc4)
C-x(9)-C motif containing 4 homolog (S. cerevisiae) 		ENSDART00000156955 (cmc4-001) 44444619-44445126 protein_coding
CIL_0007GE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000182712-ENSG00000185515 CGP 9606 X:155061622-155123074
GeneTranscriptPositionBiotype
ENSG00000182712 (CMC4)
C-x(9)-C motif containing 4 		ENST00000369479 (CMC4-003) 155061628-155065368 protein_coding
ENST00000369484 (CMC4-001) 155061622-155071362 protein_coding
ENSG00000185515 (BRCC3)
BRCA1/BRCA2-containing complex, subunit 3 		ENST00000330045 (BRCC3-002) 155071431-155122727 protein_coding
ENST00000340647 (BRCC3-006) 155071420-155121318 protein_coding
ENST00000369459 (BRCC3-004) 155071499-155123072 protein_coding
ENST00000369462 (BRCC3-001) 155071503-155123074 protein_coding
ENST00000399026 (BRCC3-003) 155073411-155078930 protein_coding
ENST00000399042 (BRCC3-201) 155071528-155120150 protein_coding
ENST00000411985 (BRCC3-007) 155071518-155116183 protein_coding
ENST00000453705 (BRCC3-005) 155071532-155123036 nonsense_mediated_decay
ENST00000620502 (BRCC3-202) 155071528-155120150 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007GE_0001ENSDARG00000078456ENSDART00000108554ENSDART00000155122ENSDARG00000097030ENSDART00000156955CIL_0007GE_0002ENSG00000182712ENST00000369479ENST00000369484ENSG00000185515ENST00000330045ENST00000340647ENST00000369459ENST00000369462ENST00000399026ENST00000399042ENST00000411985ENST00000453705ENST00000620502
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007GE_0001ENSDARG00000078456ENSDART00000108554ENSDART00000155122ENSDARG00000097030ENSDART00000156955CIL_0007GE_0002ENSG00000182712ENST00000369479ENST00000369484ENSG00000185515ENST00000330045ENST00000340647ENST00000369459ENST00000369462ENST00000453705ENST00000620502
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000078456 ENSDART00000108554 N/A N/A N/A N/A N/A N/A N/A N/A 0.200±0.00 N/A N/A N/A N/A N/A
ENSDART00000155122 N/A N/A N/A N/A N/A N/A N/A N/A 0.150±0.00 N/A N/A N/A N/A N/A
ENSDARG00000097030 ENSDART00000156955 N/A N/A N/A 3.781±0.26 N/A N/A 4.509±3.97 1.711±0.77 0.395±0.00 N/A 3.484±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000182712 ENST00000369479 N/A 2.098±0.00 N/A N/A N/A 0.531±0.00 N/A N/A N/A N/A N/A N/A N/A 2.547±0.00
ENST00000369484 16.602±0.00 6.419±0.00 0.979±0.00 4.413±3.49 7.470±5.34 6.910±4.72 12.120±5.93 9.054±4.58 5.493±3.09 4.951±4.09 7.329±4.68 9.826±5.97 9.124±2.68 11.231±4.12
ENSG00000185515 ENST00000330045 N/A N/A 2.341±0.00 0.647±0.00 0.962±0.00 3.207±0.00 0.478±0.00 N/A 0.796±0.00 N/A N/A 1.358±0.00 N/A N/A
ENST00000340647 N/A N/A N/A 1.025±0.00 N/A 1.550±0.00 N/A N/A N/A N/A 1.658±0.00 N/A N/A N/A
ENST00000369459 N/A N/A N/A 0.830±0.57 1.049±0.00 2.130±0.00 3.568±0.00 N/A 0.871±0.00 0.190±0.00 2.219±0.00 N/A 2.482±0.00 1.584±0.00
ENST00000369462 N/A N/A N/A N/A 1.482±0.14 N/A 0.180±0.00 4.685±0.00 0.449±0.00 N/A N/A 1.784±0.64 1.752±0.44 0.187±0.00
ENST00000399026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000399042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000411985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453705 1.677±0.00 N/A N/A 0.498±0.00 N/A 0.960±0.00 N/A N/A N/A 0.496±0.00 0.872±0.07 1.573±0.29 2.587±0.28 0.328±0.00
ENST00000620502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.699±0.00 N/A N/A

Loading