C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007GX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000040157-ENSDARG00000059298 CGP 7955 11:4034061-4055612
GeneTranscriptPositionBiotype
ENSDARG00000040157 (glt8d1)
glycosyltransferase 8 domain containing 1 		ENSDART00000058735 (glt8d1-001) 4034061-4049994 protein_coding
ENSDARG00000059298 (spcs1)
signal peptidase complex subunit 1 homolog (S. cerevisiae) 		ENSDART00000082379 (spcs1-001) 4051512-4055612 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0007GX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000016864-ENSG00000114902 CGP 9606 3:52694485-52711146
GeneTranscriptPositionBiotype
ENSG00000114904 (NEK4)
NIMA-related kinase 4 		ENST00000233027 (NEK4-001) 52708449-52770949 protein_coding
ENST00000383721 (NEK4-002) 52737498-52770939 protein_coding
ENST00000461689 (NEK4-003) 52737586-52770856 protein_coding
ENST00000487068 (NEK4-005) 52746150-52752070 nonsense_mediated_decay
ENST00000493199 (NEK4-006) 52743228-52746114 retained_intron
ENST00000496822 (NEK4-004) 52766316-52770946 nonsense_mediated_decay
ENST00000535191 (NEK4-201) 52711777-52770939 protein_coding
ENSG00000163938 (GNL3)
guanine nucleotide binding protein-like 3 (nucleolar) 		ENST00000394799 (GNL3-002) 52686016-52694492 protein_coding
ENST00000418458 (GNL3-001) 52685920-52694492 protein_coding
ENST00000460073 (GNL3-009) 52686177-52688190 processed_transcript
ENST00000462550 (GNL3-006) 52686032-52687827 retained_intron
ENST00000468146 (GNL3-007) 52686005-52689086 processed_transcript
ENST00000468885 (GNL3-005) 52686030-52686955 retained_intron
ENST00000474423 (GNL3-008) 52686171-52687616 protein_coding
ENST00000479230 (GNL3-011) 52681156-52689105 protein_coding
ENST00000484022 (GNL3-010) 52688925-52692929 retained_intron
ENST00000492349 (GNL3-003) 52686032-52690704 nonsense_mediated_decay
ENST00000496254 (GNL3-004) 52686049-52694459 retained_intron
ENST00000497356 (GNL3-012) 52693170-52693779 retained_intron

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007GX_0001ENSDARG00000040157ENSDART00000058735ENSDARG00000059298ENSDART00000082379CIL_0007GX_0002ENSG00000114904ENST00000233027ENST00000383721ENST00000461689ENST00000487068ENST00000493199ENST00000496822ENST00000535191ENSG00000163938ENST00000394799ENST00000418458ENST00000460073ENST00000462550ENST00000468146ENST00000468885ENST00000474423ENST00000479230ENST00000484022ENST00000492349ENST00000496254ENST00000497356
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007GX_0001ENSDARG00000040157ENSDART00000058735ENSDARG00000059298ENSDART00000082379CIL_0007GX_0002ENSG00000114904ENST00000233027ENST00000383721ENST00000535191ENSG00000163938ENST00000394799ENST00000418458ENST00000484022ENST00000496254ENST00000497356
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000040157 ENSDART00000058735 N/A N/A N/A 2.035±1.13 N/A N/A 1.785±0.47 2.486±1.38 2.420±0.00 N/A 0.707±0.00 N/A N/A N/A
ENSDARG00000059298 ENSDART00000082379 N/A N/A N/A 19.895±14.89 N/A N/A 19.180±17.65 14.855±18.65 2.320±0.00 N/A 26.491±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000114904 ENST00000233027 3.698±0.00 4.685±0.00 1.908±0.00 4.322±0.63 3.606±0.37 2.882±0.37 1.950±0.65 5.508±1.03 2.498±0.00 2.550±0.66 0.497±0.00 4.600±2.19 N/A 22.241±0.00
ENST00000383721 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.073±0.00 N/A N/A N/A N/A
ENST00000461689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 44.987±0.00
ENSG00000163938 ENST00000394799 N/A N/A N/A N/A N/A 4.010±0.00 N/A N/A N/A N/A N/A 22.752±0.00 N/A N/A
ENST00000418458 18.730±0.00 31.529±0.00 N/A 13.853±6.52 13.418±3.71 17.272±0.00 7.100±5.02 18.712±0.00 16.865±13.19 15.849±9.57 16.741±14.39 25.063±12.51 16.599±0.58 30.157±6.14
ENST00000460073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484022 N/A N/A N/A N/A 26.964±0.00 N/A N/A N/A 15.593±0.00 N/A N/A N/A N/A N/A
ENST00000492349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496254 N/A N/A 2.525±0.00 N/A N/A 6.165±0.00 N/A N/A N/A N/A N/A 6.259±0.00 N/A N/A
ENST00000497356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 312.663±0.00 100.596±0.00 184.073±0.00

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