| Source ID |
Type |
Tax ID |
Position |
| hs1984 |
VISTA |
10090 |
13:86095792-86714414  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007U3_0002 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007U3_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000127184' => 'cytochrome c oxidase subunit VIIc',
'ENSG00000205449' => 'neuroblastoma breakpoint family, member 22, pseudogene',
'ENSG00000207013' => 'RNA, U6 small nuclear 804, pseudogene',
'ENSG00000248195' => null,
'ENSG00000248363' => null,
'ENSG00000250124' => null,
'ENSG00000250359' => 'protein tyrosine phosphatase type IVA, member 1 pseudogene 4',
'ENSG00000251585' => null,
'ENSG00000280009' => null,
'ENSMUSG00000098152' => 'predicted gene, 27025'
),
'gene_name_arr' => array(
'ENSG00000127184' => 'COX7C',
'ENSG00000205449' => 'NBPF22P',
'ENSG00000207013' => 'RNU6-804P',
'ENSG00000248195' => 'CTC-261N6.3',
'ENSG00000248363' => 'CTC-261N6.1',
'ENSG00000250124' => 'CTC-261N6.2',
'ENSG00000250359' => 'PTP4A1P4',
'ENSG00000251585' => 'CTD-2299E8.1',
'ENSG00000280009' => 'CTD-2123J17.2',
'ENSMUSG00000098152' => 'Gm27025'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 4 => 'Bladder',
(int) 8 => 'Brain',
(int) 12 => 'Breast',
(int) 15 => 'Colon',
(int) 19 => 'Heart',
(int) 24 => 'Kidney',
(int) 27 => 'Liver',
(int) 30 => 'Lung',
(int) 34 => 'Muscle',
(int) 38 => 'Ovary',
(int) 42 => 'Placenta',
(int) 45 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 18,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000247655' => array(
'start' => '86617904',
'end' => '86620962',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'COX7C-001'
),
'ENST00000505430' => array(
'start' => '86617941',
'end' => '86620766',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'COX7C-004'
),
'ENST00000509578' => array(
'start' => '86617956',
'end' => '86620761',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'COX7C-002'
),
'ENST00000510447' => array(
'start' => '86618175',
'end' => '86620948',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'COX7C-003'
),
'ENST00000511472' => array(
'start' => '86617928',
'end' => '86620766',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'COX7C-005'
),
'ENST00000513124' => array(
'start' => '86617986',
'end' => '86620766',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'COX7C-007'
),
'ENST00000515763' => array(
'start' => '86617973',
'end' => '86620766',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'COX7C-006'
),
'ENST00000508988' => array(
'start' => '86282766',
'end' => '86296309',
'transcript_biotype' => 'transcribed_unprocessed_pseudogene',
'transcript_name' => 'NBPF22P-002'
),
'ENST00000590707' => array(
'start' => '86282460',
'end' => '86296463',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NBPF22P-004'
),
'ENST00000384286' => array(
'start' => '86663144',
'end' => '86663250',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-804P-201'
),
'ENST00000505348' => array(
'start' => '86335024',
'end' => '86335808',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-261N6.3-001'
),
'ENST00000510946' => array(
'start' => '86353803',
'end' => '86368853',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-261N6.1-002'
),
'ENST00000511940' => array(
'start' => '86353803',
'end' => '86368854',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-261N6.1-001'
),
'ENST00000515706' => array(
'start' => '86380660',
'end' => '86381426',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-261N6.2-001'
),
'ENST00000512479' => array(
'start' => '86087526',
'end' => '86087847',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'PTP4A1P4-001'
),
'ENST00000502592' => array(
'start' => '86402465',
'end' => '86402960',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTD-2299E8.1-001'
),
'ENST00000624021' => array(
'start' => '86305233',
'end' => '86306149',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2123J17.2-001'
),
'ENSMUST00000182392' => array(
'start' => '86235827',
'end' => '86237727',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm27025-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007U3_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007U3_0001' => array(
'genes_in_region' => array(
'ENSG00000127184' => array(
[maximum depth reached]
),
'ENSG00000205449' => array(
[maximum depth reached]
),
'ENSG00000248363' => array(
[maximum depth reached]
),
'ENSG00000250124' => array(
[maximum depth reached]
),
'ENSG00000250359' => array(
[maximum depth reached]
),
'ENSG00000251585' => array(
[maximum depth reached]
),
'ENSG00000280009' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Lung',
(int) 39 => 'Testis',
(int) 40 => 'Bladder',
(int) 41 => 'Ovary',
(int) 42 => 'Testis',
(int) 43 => 'Testis',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Muscle',
(int) 47 => 'Heart',
(int) 48 => 'Bladder',
(int) 49 => 'Brain',
(int) 50 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000127184' => 'cytochrome c oxidase subunit VIIc',
'ENSG00000205449' => 'neuroblastoma breakpoint family, member 22, pseudogene',
'ENSG00000207013' => 'RNA, U6 small nuclear 804, pseudogene',
'ENSG00000248195' => null,
'ENSG00000248363' => null,
'ENSG00000250124' => null,
'ENSG00000250359' => 'protein tyrosine phosphatase type IVA, member 1 pseudogene 4',
'ENSG00000251585' => null,
'ENSG00000280009' => null,
'ENSMUSG00000098152' => 'predicted gene, 27025'
)
$gene_name_arr = array(
'ENSG00000127184' => 'COX7C',
'ENSG00000205449' => 'NBPF22P',
'ENSG00000207013' => 'RNU6-804P',
'ENSG00000248195' => 'CTC-261N6.3',
'ENSG00000248363' => 'CTC-261N6.1',
'ENSG00000250124' => 'CTC-261N6.2',
'ENSG00000250359' => 'PTP4A1P4',
'ENSG00000251585' => 'CTD-2299E8.1',
'ENSG00000280009' => 'CTD-2123J17.2',
'ENSMUSG00000098152' => 'Gm27025'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007U3_0001',
'tax_id' => '9606',
'chromosome' => '5',
'seq_start' => '86083247',
'seq_end' => '86690284',
'region_length' => '607037',
'region_type' => 'VISTA',
'el_id' => 'hs1984'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007U3_0002',
'tax_id' => '10090',
'chromosome' => '13',
'seq_start' => '86095792',
'seq_end' => '86714414',
'region_length' => '618622',
'region_type' => 'VISTA',
'el_id' => 'hs1984'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 4 => 'Bladder',
(int) 8 => 'Brain',
(int) 12 => 'Breast',
(int) 15 => 'Colon',
(int) 19 => 'Heart',
(int) 24 => 'Kidney',
(int) 27 => 'Liver',
(int) 30 => 'Lung',
(int) 34 => 'Muscle',
(int) 38 => 'Ovary',
(int) 42 => 'Placenta',
(int) 45 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 18
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000247655' => array(
'start' => '86617904',
'end' => '86620962',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'COX7C-001'
),
'ENST00000505430' => array(
'start' => '86617941',
'end' => '86620766',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'COX7C-004'
),
'ENST00000509578' => array(
'start' => '86617956',
'end' => '86620761',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'COX7C-002'
),
'ENST00000510447' => array(
'start' => '86618175',
'end' => '86620948',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'COX7C-003'
),
'ENST00000511472' => array(
'start' => '86617928',
'end' => '86620766',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'COX7C-005'
),
'ENST00000513124' => array(
'start' => '86617986',
'end' => '86620766',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'COX7C-007'
),
'ENST00000515763' => array(
'start' => '86617973',
'end' => '86620766',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'COX7C-006'
),
'ENST00000508988' => array(
'start' => '86282766',
'end' => '86296309',
'transcript_biotype' => 'transcribed_unprocessed_pseudogene',
'transcript_name' => 'NBPF22P-002'
),
'ENST00000590707' => array(
'start' => '86282460',
'end' => '86296463',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NBPF22P-004'
),
'ENST00000384286' => array(
'start' => '86663144',
'end' => '86663250',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-804P-201'
),
'ENST00000505348' => array(
'start' => '86335024',
'end' => '86335808',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-261N6.3-001'
),
'ENST00000510946' => array(
'start' => '86353803',
'end' => '86368853',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-261N6.1-002'
),
'ENST00000511940' => array(
'start' => '86353803',
'end' => '86368854',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-261N6.1-001'
),
'ENST00000515706' => array(
'start' => '86380660',
'end' => '86381426',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-261N6.2-001'
),
'ENST00000512479' => array(
'start' => '86087526',
'end' => '86087847',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'PTP4A1P4-001'
),
'ENST00000502592' => array(
'start' => '86402465',
'end' => '86402960',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTD-2299E8.1-001'
),
'ENST00000624021' => array(
'start' => '86305233',
'end' => '86306149',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2123J17.2-001'
),
'ENSMUST00000182392' => array(
'start' => '86235827',
'end' => '86237727',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm27025-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007U3_0001' => array(
'genes_in_region' => array(
'ENSG00000127184' => array(
[maximum depth reached]
),
'ENSG00000205449' => array(
[maximum depth reached]
),
'ENSG00000248363' => array(
[maximum depth reached]
),
'ENSG00000250124' => array(
[maximum depth reached]
),
'ENSG00000250359' => array(
[maximum depth reached]
),
'ENSG00000251585' => array(
[maximum depth reached]
),
'ENSG00000280009' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Lung',
(int) 39 => 'Testis',
(int) 40 => 'Bladder',
(int) 41 => 'Ovary',
(int) 42 => 'Testis',
(int) 43 => 'Testis',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Muscle',
(int) 47 => 'Heart',
(int) 48 => 'Bladder',
(int) 49 => 'Brain',
(int) 50 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007U3_0002',
'tax_id' => '10090',
'chromosome' => '13',
'seq_start' => '86095792',
'seq_end' => '86714414',
'region_length' => '618622',
'region_type' => 'VISTA',
'el_id' => 'hs1984'
)
)
$gene_el = array(
'ENST00000624021' => array(
'Bladder' => array(
'average_FPKM' => '0.651',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.008',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.020',
'stddev_FPKM' => '0.01'
)
)
)
$gene_key = 'ENSG00000280009'
$is_first = false
$tran_el = array(
'Bladder' => array(
'average_FPKM' => '0.651',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.008',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.020',
'stddev_FPKM' => '0.01'
)
)
$tran_key = 'ENST00000624021'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007U3_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000127184' => 'cytochrome c oxidase subunit VIIc',
'ENSG00000205449' => 'neuroblastoma breakpoint family, member 22, pseudogene',
'ENSG00000207013' => 'RNA, U6 small nuclear 804, pseudogene',
'ENSG00000248195' => null,
'ENSG00000248363' => null,
'ENSG00000250124' => null,
'ENSG00000250359' => 'protein tyrosine phosphatase type IVA, member 1 pseudogene 4',
'ENSG00000251585' => null,
'ENSG00000280009' => null,
'ENSMUSG00000098152' => 'predicted gene, 27025'
),
'gene_name_arr' => array(
'ENSG00000127184' => 'COX7C',
'ENSG00000205449' => 'NBPF22P',
'ENSG00000207013' => 'RNU6-804P',
'ENSG00000248195' => 'CTC-261N6.3',
'ENSG00000248363' => 'CTC-261N6.1',
'ENSG00000250124' => 'CTC-261N6.2',
'ENSG00000250359' => 'PTP4A1P4',
'ENSG00000251585' => 'CTD-2299E8.1',
'ENSG00000280009' => 'CTD-2123J17.2',
'ENSMUSG00000098152' => 'Gm27025'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 4 => 'Bladder',
(int) 8 => 'Brain',
(int) 12 => 'Breast',
(int) 15 => 'Colon',
(int) 19 => 'Heart',
(int) 24 => 'Kidney',
(int) 27 => 'Liver',
(int) 30 => 'Lung',
(int) 34 => 'Muscle',
(int) 38 => 'Ovary',
(int) 42 => 'Placenta',
(int) 45 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 18,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000247655' => array(
'start' => '86617904',
'end' => '86620962',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'COX7C-001'
),
'ENST00000505430' => array(
'start' => '86617941',
'end' => '86620766',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'COX7C-004'
),
'ENST00000509578' => array(
'start' => '86617956',
'end' => '86620761',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'COX7C-002'
),
'ENST00000510447' => array(
'start' => '86618175',
'end' => '86620948',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'COX7C-003'
),
'ENST00000511472' => array(
'start' => '86617928',
'end' => '86620766',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'COX7C-005'
),
'ENST00000513124' => array(
'start' => '86617986',
'end' => '86620766',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'COX7C-007'
),
'ENST00000515763' => array(
'start' => '86617973',
'end' => '86620766',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'COX7C-006'
),
'ENST00000508988' => array(
'start' => '86282766',
'end' => '86296309',
'transcript_biotype' => 'transcribed_unprocessed_pseudogene',
'transcript_name' => 'NBPF22P-002'
),
'ENST00000590707' => array(
'start' => '86282460',
'end' => '86296463',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NBPF22P-004'
),
'ENST00000384286' => array(
'start' => '86663144',
'end' => '86663250',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-804P-201'
),
'ENST00000505348' => array(
'start' => '86335024',
'end' => '86335808',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-261N6.3-001'
),
'ENST00000510946' => array(
'start' => '86353803',
'end' => '86368853',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-261N6.1-002'
),
'ENST00000511940' => array(
'start' => '86353803',
'end' => '86368854',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-261N6.1-001'
),
'ENST00000515706' => array(
'start' => '86380660',
'end' => '86381426',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-261N6.2-001'
),
'ENST00000512479' => array(
'start' => '86087526',
'end' => '86087847',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'PTP4A1P4-001'
),
'ENST00000502592' => array(
'start' => '86402465',
'end' => '86402960',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTD-2299E8.1-001'
),
'ENST00000624021' => array(
'start' => '86305233',
'end' => '86306149',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2123J17.2-001'
),
'ENSMUST00000182392' => array(
'start' => '86235827',
'end' => '86237727',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm27025-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007U3_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007U3_0001' => array(
'genes_in_region' => array(
'ENSG00000127184' => array(
[maximum depth reached]
),
'ENSG00000205449' => array(
[maximum depth reached]
),
'ENSG00000248363' => array(
[maximum depth reached]
),
'ENSG00000250124' => array(
[maximum depth reached]
),
'ENSG00000250359' => array(
[maximum depth reached]
),
'ENSG00000251585' => array(
[maximum depth reached]
),
'ENSG00000280009' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Lung',
(int) 39 => 'Testis',
(int) 40 => 'Bladder',
(int) 41 => 'Ovary',
(int) 42 => 'Testis',
(int) 43 => 'Testis',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Muscle',
(int) 47 => 'Heart',
(int) 48 => 'Bladder',
(int) 49 => 'Brain',
(int) 50 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000127184' => 'cytochrome c oxidase subunit VIIc',
'ENSG00000205449' => 'neuroblastoma breakpoint family, member 22, pseudogene',
'ENSG00000207013' => 'RNA, U6 small nuclear 804, pseudogene',
'ENSG00000248195' => null,
'ENSG00000248363' => null,
'ENSG00000250124' => null,
'ENSG00000250359' => 'protein tyrosine phosphatase type IVA, member 1 pseudogene 4',
'ENSG00000251585' => null,
'ENSG00000280009' => null,
'ENSMUSG00000098152' => 'predicted gene, 27025'
)
$gene_name_arr = array(
'ENSG00000127184' => 'COX7C',
'ENSG00000205449' => 'NBPF22P',
'ENSG00000207013' => 'RNU6-804P',
'ENSG00000248195' => 'CTC-261N6.3',
'ENSG00000248363' => 'CTC-261N6.1',
'ENSG00000250124' => 'CTC-261N6.2',
'ENSG00000250359' => 'PTP4A1P4',
'ENSG00000251585' => 'CTD-2299E8.1',
'ENSG00000280009' => 'CTD-2123J17.2',
'ENSMUSG00000098152' => 'Gm27025'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007U3_0001',
'tax_id' => '9606',
'chromosome' => '5',
'seq_start' => '86083247',
'seq_end' => '86690284',
'region_length' => '607037',
'region_type' => 'VISTA',
'el_id' => 'hs1984'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007U3_0002',
'tax_id' => '10090',
'chromosome' => '13',
'seq_start' => '86095792',
'seq_end' => '86714414',
'region_length' => '618622',
'region_type' => 'VISTA',
'el_id' => 'hs1984'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 4 => 'Bladder',
(int) 8 => 'Brain',
(int) 12 => 'Breast',
(int) 15 => 'Colon',
(int) 19 => 'Heart',
(int) 24 => 'Kidney',
(int) 27 => 'Liver',
(int) 30 => 'Lung',
(int) 34 => 'Muscle',
(int) 38 => 'Ovary',
(int) 42 => 'Placenta',
(int) 45 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 18
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000247655' => array(
'start' => '86617904',
'end' => '86620962',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'COX7C-001'
),
'ENST00000505430' => array(
'start' => '86617941',
'end' => '86620766',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'COX7C-004'
),
'ENST00000509578' => array(
'start' => '86617956',
'end' => '86620761',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'COX7C-002'
),
'ENST00000510447' => array(
'start' => '86618175',
'end' => '86620948',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'COX7C-003'
),
'ENST00000511472' => array(
'start' => '86617928',
'end' => '86620766',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'COX7C-005'
),
'ENST00000513124' => array(
'start' => '86617986',
'end' => '86620766',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'COX7C-007'
),
'ENST00000515763' => array(
'start' => '86617973',
'end' => '86620766',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'COX7C-006'
),
'ENST00000508988' => array(
'start' => '86282766',
'end' => '86296309',
'transcript_biotype' => 'transcribed_unprocessed_pseudogene',
'transcript_name' => 'NBPF22P-002'
),
'ENST00000590707' => array(
'start' => '86282460',
'end' => '86296463',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NBPF22P-004'
),
'ENST00000384286' => array(
'start' => '86663144',
'end' => '86663250',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-804P-201'
),
'ENST00000505348' => array(
'start' => '86335024',
'end' => '86335808',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-261N6.3-001'
),
'ENST00000510946' => array(
'start' => '86353803',
'end' => '86368853',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-261N6.1-002'
),
'ENST00000511940' => array(
'start' => '86353803',
'end' => '86368854',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-261N6.1-001'
),
'ENST00000515706' => array(
'start' => '86380660',
'end' => '86381426',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-261N6.2-001'
),
'ENST00000512479' => array(
'start' => '86087526',
'end' => '86087847',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'PTP4A1P4-001'
),
'ENST00000502592' => array(
'start' => '86402465',
'end' => '86402960',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTD-2299E8.1-001'
),
'ENST00000624021' => array(
'start' => '86305233',
'end' => '86306149',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2123J17.2-001'
),
'ENSMUST00000182392' => array(
'start' => '86235827',
'end' => '86237727',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm27025-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007U3_0001' => array(
'genes_in_region' => array(
'ENSG00000127184' => array(
[maximum depth reached]
),
'ENSG00000205449' => array(
[maximum depth reached]
),
'ENSG00000248363' => array(
[maximum depth reached]
),
'ENSG00000250124' => array(
[maximum depth reached]
),
'ENSG00000250359' => array(
[maximum depth reached]
),
'ENSG00000251585' => array(
[maximum depth reached]
),
'ENSG00000280009' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Lung',
(int) 39 => 'Testis',
(int) 40 => 'Bladder',
(int) 41 => 'Ovary',
(int) 42 => 'Testis',
(int) 43 => 'Testis',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Muscle',
(int) 47 => 'Heart',
(int) 48 => 'Bladder',
(int) 49 => 'Brain',
(int) 50 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007U3_0002',
'tax_id' => '10090',
'chromosome' => '13',
'seq_start' => '86095792',
'seq_end' => '86714414',
'region_length' => '618622',
'region_type' => 'VISTA',
'el_id' => 'hs1984'
)
)
$gene_el = array(
'ENST00000624021' => array(
'Bladder' => array(
'average_FPKM' => '0.651',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.008',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.020',
'stddev_FPKM' => '0.01'
)
)
)
$gene_key = 'ENSG00000280009'
$is_first = false
$tran_el = array(
'Bladder' => array(
'average_FPKM' => '0.651',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.008',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.020',
'stddev_FPKM' => '0.01'
)
)
$tran_key = 'ENST00000624021'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(COX7C)