C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: protein tyrosine phosphatase type IVA, member 1 pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000512479 PTP4A1P4-001 ENSG00000250359 9606 + 5:86087526-86087847 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000512479
Transcript ID Muscle
ENST00000512479 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TM CIL_0005TM_0002 CGP 5:83940554-86620962
CIL_0007U3 CIL_0007U3_0001 VISTA 5:86083247-86690284

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122008 Gm13363-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000075251 Gm5582-201 processed_pseudogene Mus_musculus 0 401
ENSMUST00000120920 Gm15801-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000159764 Gm8783-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000076587 Ptp4a1-005 protein_coding Mus_musculus 0 396
ENSMUST00000027232 Ptp4a1-001 protein_coding Mus_musculus 0 396
ENSMUST00000153681 Ptp4a1-003 retained_intron Mus_musculus 0 292

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