C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000824_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs538 VISTA 9606 6:51351096-51952217
GeneTranscriptPositionBiotype
ENSG00000170927 (PKHD1)
polycystic kidney and hepatic disease 1 (autosomal recessive) 		ENST00000340994 (PKHD1-002) 51720849-52087610 protein_coding
ENST00000371117 (PKHD1-001) 51615300-52087625 protein_coding
ENSG00000214641 (RP11-793K1.1)
 ENST00000398713 (RP11-793K1.1-001) 51537155-51537543 processed_pseudogene
ENSG00000228689 (RP3-335N17.2)
 ENST00000454361 (RP3-335N17.2-001) 51605265-51622884 antisense
ENST00000587000 (RP3-335N17.2-003) 51621821-51622541 antisense
ENST00000589278 (RP3-335N17.2-002) 51599723-51622541 antisense
ENSG00000232702 (RP3-437C15.1)
 ENST00000416077 (RP3-437C15.1-001) 51410081-51410537 processed_pseudogene
CIL_000824_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs538 VISTA 10090 1:19806392-20407514
GeneTranscriptPositionBiotype
ENSMUSG00000043760 (Pkhd1)
polycystic kidney and hepatic disease 1 		ENSMUST00000088448 (Pkhd1-001) 20057779-20618064 protein_coding
ENSMUST00000128051 (Pkhd1-004) 20606297-20618040 processed_transcript
ENSMUST00000132647 (Pkhd1-002) 20374722-20409448 processed_transcript
ENSMUST00000147480 (Pkhd1-003) 20592953-20618064 retained_intron
ENSMUSG00000089914 (4930486I03Rik)
RIKEN cDNA 4930486I03 gene 		ENSMUST00000161509 (4930486I03Rik-001) 20356452-20392300 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000824_0001ENSG00000170927ENST00000340994ENST00000371117ENSG00000214641ENST00000398713ENSG00000228689ENST00000454361ENST00000587000ENST00000589278ENSG00000232702ENST00000416077CIL_000824_0002ENSMUSG00000043760ENSMUST00000088448ENSMUST00000128051ENSMUST00000132647ENSMUST00000147480ENSMUSG00000089914ENSMUST00000161509
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000824_0001ENSG00000170927ENST00000340994ENST00000371117ENSG00000214641ENST00000398713ENSG00000228689ENST00000454361ENST00000587000ENST00000589278ENSG00000232702ENST00000416077CIL_000824_0002ENSMUSG00000043760ENSMUST00000088448ENSMUST00000132647ENSMUSG00000089914ENSMUST00000161509
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000170927 ENST00000340994 N/A N/A 7.969±0.00 N/A 0.004±0.00 0.018±0.01 N/A 0.606±0.00 0.030±0.00 N/A 0.127±0.00 0.018±0.01 N/A N/A
ENST00000371117 0.005±0.00 N/A 9.442±0.00 0.004±0.00 0.009±0.00 N/A 0.011±0.00 2.593±0.00 0.169±0.00 0.035±0.00 N/A 0.011±0.00 0.023±0.01 0.278±0.05
ENSG00000214641 ENST00000398713 0.036±0.00 N/A N/A 0.039±0.00 N/A N/A N/A 0.038±0.00 N/A 0.071±0.00 N/A N/A N/A N/A
ENSG00000228689 ENST00000454361 N/A N/A N/A N/A N/A N/A N/A 0.572±0.00 N/A N/A N/A N/A N/A N/A
ENST00000587000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.405±0.43
ENST00000589278 0.052±0.00 0.097±0.00 N/A 0.208±0.00 0.041±0.00 0.029±0.00 0.104±0.00 N/A 0.045±0.00 0.102±0.00 0.184±0.00 N/A N/A N/A
ENSG00000232702 ENST00000416077 N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A 0.186±0.00 0.102±0.01 0.108±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000043760 ENSMUST00000088448 0.119±0.16 0.012±0.00 1.255±0.10 0.004±0.00 0.010±0.01 0.188±0.04 N/A 7.043±3.64 0.265±0.20 0.033±0.01 0.004±0.00 0.079±0.02 0.016±0.00 N/A
ENSMUST00000128051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.879±0.00 N/A N/A
ENSMUST00000147480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000089914 ENSMUST00000161509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.371±0.05 N/A 16.241±6.09

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