C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398713 RP11-793K1.1-001 ENSG00000214641 9606 - 6:51537155-51537543 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainKidneyLungENST00000398713
Transcript ID Adipose Brain Kidney Lung
ENST00000398713 0.036±0.00 0.039±0.00 0.038±0.00 0.071±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MX CIL_0005MX_0001 CGP 6:50818723-52087625
CIL_00092F CIL_00092F_0001 VISTA 6:50983870-51584912
CIL_000824 CIL_000824_0001 VISTA 6:51351096-51952217
CIL_0007MB CIL_0007MB_0001 UCNEbase 6:51450598-51651608

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172457 Rps15a-201 protein_coding Mus_musculus 0 357
ENSMUST00000106588 Rps15a-004 protein_coding Mus_musculus 0 357
ENSMUST00000131374 Rps15a-001 protein_coding Mus_musculus 0 357
ENSMUST00000117476 Rps15a-ps6-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000132586 Rps15a-ps5-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000182051 Gm26983-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000087473 Rps15a-ps2-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000121072 Rps15a-ps3-001 processed_pseudogene Mus_musculus 0 318

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