C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000858_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs165 VISTA 9606 16:72289766-72891318
GeneTranscriptPositionBiotype
ENSG00000140836 (ZFHX3)
zinc finger homeobox 3 		ENST00000268489 (ZFHX3-001) 72782885-73048375 protein_coding
ENST00000397992 (ZFHX3-002) 72782885-73059698 protein_coding
ENST00000558842 (ZFHX3-004) 73058881-73059222 processed_transcript
ENST00000563625 (ZFHX3-003) 72829509-72889834 retained_intron
ENSG00000221286 (AC092289.1)
 ENST00000408359 (AC092289.1-201) 72579542-72579637 miRNA
ENSG00000259209 (RP5-991G20.2)
 ENST00000558618 (RP5-991G20.2-001) 72806983-72809639 antisense
ENST00000620814 (RP5-991G20.2-003) 72805998-72809872 antisense
ENST00000624370 (RP5-991G20.2-004) 72807045-72808118 antisense
ENSG00000259768 (RP5-991G20.1)
 ENST00000563328 (RP5-991G20.1-001) 72665170-72791624 antisense
ENSG00000260664 (AC004158.3)
 ENST00000564508 (AC004158.3-001) 72425948-72430266 lincRNA
ENST00000624327 (AC004158.3-002) 72429353-72533892 lincRNA
ENSG00000261008 (AC004158.2)
 ENST00000561611 (AC004158.2-002) 72425485-72665004 lincRNA
ENST00000563770 (AC004158.2-005) 72479751-72627686 lincRNA
ENST00000563823 (AC004158.2-006) 72523332-72627686 lincRNA
ENST00000570035 (AC004158.2-001) 72522138-72665009 lincRNA
ENST00000570152 (AC004158.2-004) 72570481-72664949 lincRNA
ENST00000624829 (AC004158.2-007) 72283301-72664947 lincRNA
ENSG00000261764 (KRT18P18)
keratin 18 pseudogene 18 		ENST00000565278 (KRT18P18-001) 72728616-72729894 transcribed_processed_pseudogene
ENSG00000273581 (AC092289.2)
 ENST00000614764 (AC092289.2-201) 72607780-72607888 miRNA
ENSG00000279206 (RP5-991G20.6)
 ENST00000624116 (RP5-991G20.6-001) 72772673-72773272 lincRNA
ENSG00000280264 (AC004158.1)
 ENST00000623725 (AC004158.1-201) 72496967-72497341 protein_coding

Homo sapiens Ensembl (GRCh38)

Genome
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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_000858_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs165 VISTA 10090 8:108822961-109424625
GeneTranscriptPositionBiotype
ENSMUSG00000038872 (Zfhx3)
zinc finger homeobox 3 		ENSMUST00000043896 (Zfhx3-001) 108714644-108961630 protein_coding
ENSMUST00000188994 (Zfhx3-002) 108703100-108800270 protein_coding
ENSMUSG00000093697 (Gm20686)
predicted gene 20686 		ENSMUST00000175846 (Gm20686-001) 108918264-108921874 antisense
ENSMUSG00000097393 (D030068K23Rik)
RIKEN cDNA D030068K23 gene 		ENSMUST00000180382 (D030068K23Rik-201) 109075223-109231047 lincRNA
ENSMUST00000180524 (D030068K23Rik-202) 109075222-109253639 lincRNA
ENSMUST00000181098 (D030068K23Rik-203) 109249866-109273811 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000858_0001ENSG00000140836ENST00000268489ENST00000397992ENST00000558842ENST00000563625ENSG00000221286ENST00000408359ENSG00000259209ENST00000558618ENST00000620814ENST00000624370ENSG00000259768ENST00000563328ENSG00000260664ENST00000564508ENST00000624327ENSG00000261008ENST00000561611ENST00000563770ENST00000563823ENST00000570035ENST00000570152ENST00000624829ENSG00000261764ENST00000565278ENSG00000273581ENST00000614764ENSG00000279206ENST00000624116ENSG00000280264ENST00000623725CIL_000858_0002ENSMUSG00000038872ENSMUST00000043896ENSMUST00000188994ENSMUSG00000093697ENSMUST00000175846ENSMUSG00000097393ENSMUST00000180382ENSMUST00000180524ENSMUST00000181098
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000858_0001ENSG00000140836ENST00000268489ENST00000397992ENSG00000221286ENST00000408359ENSG00000259209ENST00000558618ENST00000620814ENST00000624370ENSG00000259768ENST00000563328ENSG00000260664ENST00000564508ENST00000624327ENSG00000261008ENST00000561611ENST00000563770ENST00000563823ENST00000570035ENST00000624829ENSG00000261764ENST00000565278ENSG00000273581ENST00000614764ENSG00000279206ENST00000624116ENSG00000280264ENST00000623725CIL_000858_0002ENSMUSG00000038872ENSMUST00000043896ENSMUSG00000093697ENSMUST00000175846ENSMUSG00000097393ENSMUST00000180382ENSMUST00000180524ENSMUST00000181098
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140836 ENST00000268489 2.846±0.00 1.535±0.00 0.574±0.00 0.467±0.19 2.931±0.00 1.923±0.62 0.941±0.58 1.264±0.27 0.396±0.00 1.136±0.04 2.810±1.01 1.031±0.48 1.095±0.49 1.211±0.73
ENST00000397992 1.459±0.00 0.340±0.00 0.520±0.00 0.356±0.24 1.332±0.00 1.257±0.47 0.573±0.39 1.088±0.00 0.557±0.07 1.489±0.41 4.108±0.00 0.990±0.64 2.001±1.82 0.878±0.00
ENST00000558842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000221286 ENST00000408359 N/A N/A N/A N/A N/A 0.231±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259209 ENST00000558618 N/A 0.114±0.00 N/A N/A 0.051±0.00 N/A N/A N/A N/A N/A N/A N/A 0.132±0.00 0.312±0.00
ENST00000620814 N/A 0.139±0.00 N/A N/A 0.393±0.37 N/A 0.056±0.00 N/A N/A 0.107±0.00 N/A 0.110±0.05 N/A 0.959±0.12
ENST00000624370 0.094±0.00 0.045±0.00 0.788±0.00 0.094±0.08 0.385±0.32 1.271±0.00 0.250±0.16 0.023±0.00 1.045±0.00 0.737±0.72 0.613±0.00 0.151±0.06 0.031±0.00 0.324±0.04
ENSG00000259768 ENST00000563328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.321±0.20 N/A 2.146±0.00
ENSG00000260664 ENST00000564508 0.034±0.00 0.046±0.00 0.073±0.00 1.734±0.09 0.015±0.00 0.212±0.00 0.004±0.00 N/A 0.002±0.00 N/A N/A 0.025±0.00 0.012±0.01 0.029±0.00
ENST00000624327 N/A 0.170±0.00 N/A 0.658±0.00 0.128±0.00 0.111±0.00 0.051±0.00 0.027±0.00 0.007±0.00 0.088±0.00 N/A 0.053±0.05 0.022±0.00 N/A
ENSG00000261008 ENST00000561611 N/A N/A N/A N/A N/A N/A N/A N/A 0.244±0.00 N/A N/A 0.072±0.00 0.027±0.00 N/A
ENST00000563770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.227±0.00
ENST00000563823 N/A N/A N/A N/A 0.525±0.39 N/A N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A
ENST00000570035 N/A N/A N/A N/A 0.083±0.00 N/A N/A 0.388±0.00 0.013±0.00 N/A N/A N/A 0.053±0.00 N/A
ENST00000570152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624829 0.064±0.00 0.141±0.00 N/A N/A 0.460±0.00 0.470±0.34 0.036±0.00 0.183±0.00 N/A N/A 0.027±0.00 0.057±0.02 0.022±0.01 N/A
ENSG00000261764 ENST00000565278 N/A N/A N/A N/A 0.056±0.00 N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A 0.022±0.00
ENSG00000273581 ENST00000614764 0.608±0.00 N/A N/A N/A N/A 1.020±0.00 0.405±0.00 0.664±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000279206 ENST00000624116 0.109±0.00 0.070±0.00 N/A 0.014±0.00 0.162±0.00 0.820±0.00 N/A N/A N/A N/A N/A 0.048±0.00 0.087±0.00 0.077±0.00
ENSG00000280264 ENST00000623725 N/A 0.046±0.00 N/A 0.449±0.00 0.140±0.00 0.203±0.12 N/A 0.137±0.00 0.039±0.00 0.040±0.00 0.110±0.07 0.128±0.04 0.161±0.00 0.128±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038872 ENSMUST00000043896 1.185±0.24 4.956±0.44 1.515±0.52 5.854±5.84 1.095±0.52 2.505±0.48 0.586±0.11 0.755±0.10 0.465±0.33 3.606±0.21 0.486±0.08 1.461±0.60 0.880±0.31 0.587±0.34
ENSMUST00000188994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000093697 ENSMUST00000175846 0.135±0.07 0.352±0.12 N/A 0.176±0.06 0.100±0.00 N/A 0.245±0.10 0.085±0.00 0.148±0.05 0.134±0.00 0.108±0.02 N/A 0.072±0.06 0.107±0.04
ENSMUSG00000097393 ENSMUST00000180382 N/A N/A N/A N/A N/A N/A N/A N/A 0.006±0.00 0.017±0.00 N/A 0.071±0.03 0.012±0.00 N/A
ENSMUST00000180524 N/A N/A 0.002±0.00 N/A N/A N/A N/A N/A 0.004±0.00 N/A N/A 0.050±0.00 0.024±0.01 0.071±0.03
ENSMUST00000181098 N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A N/A 0.102±0.07 N/A N/A

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