C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger homeobox 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043896 Zfhx3-001 ENSMUSG00000038872 10090 + 8:108714644-108961630 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043896
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043896 1.185±0.24 4.956±0.44 1.515±0.52 5.854±5.84 1.095±0.52 2.505±0.48 0.586±0.11 0.755±0.10 0.465±0.33 3.606±0.21 0.486±0.08 1.461±0.60 0.880±0.31 0.587±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KL CIL_0007KL_0002 UCNEbase 8:107891837-109311070
CIL_0008U6 CIL_0008U6_0002 VISTA 8:108154367-108755837
CIL_0008FF CIL_0008FF_0002 VISTA 8:108166096-108768543
CIL_0008I8 CIL_0008I8_0002 VISTA 8:108502401-109104649
CIL_0008I9 CIL_0008I9_0002 VISTA 8:108550359-109151497
CIL_0008IF CIL_0008IF_0002 VISTA 8:108589313-109190249
CIL_0008IG CIL_0008IG_0002 VISTA 8:108637414-109238616

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0007050 IEA cell cycle arrest
GO:0007420 IEA brain development
GO:0008270 IEA zinc ion binding
GO:0019899 IEA enzyme binding
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045662 IEA negative regulation of myoblast differentiation
GO:0045663 IEA positive regulation of myoblast differentiation
GO:0045664 IEA regulation of neuron differentiation
GO:0045892 IEA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000114582 zfhx3-001 protein_coding Danio_rerio 0 375
ENSDART00000112256 zfhx4-201 protein_coding Danio_rerio 5.99994e-41 176
ENSDART00000135846 zfhx4-001 protein_coding Danio_rerio 5.99994e-41 176
ENST00000268489 ZFHX3-001 protein_coding Homo_sapiens 0 13490
ENST00000397992 ZFHX3-002 protein_coding Homo_sapiens 0 8887
ENST00000458716 ZFHX4-003 retained_intron Homo_sapiens 0 228
ENST00000518282 ZFHX4-005 protein_coding Homo_sapiens 0 228
ENST00000521891 ZFHX4-002 protein_coding Homo_sapiens 0 228
ENST00000563625 ZFHX3-003 retained_intron Homo_sapiens 0 235

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