C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008LU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1302 VISTA 9606 6:112201111-112805123
GeneTranscriptPositionBiotype
ENSG00000112769 (LAMA4)
laminin, alpha 4 		ENST00000230538 (LAMA4-001) 112108760-112254715 protein_coding
ENST00000243219 (LAMA4-016) 112216402-112254538 protein_coding
ENST00000368638 (LAMA4-005) 112253361-112254588 protein_coding
ENST00000368640 (LAMA4-003) 112179766-112191764 protein_coding
ENST00000389463 (LAMA4-009) 112108874-112254600 protein_coding
ENST00000423735 (LAMA4-004) 112200133-112216449 processed_transcript
ENST00000424408 (LAMA4-012) 112109293-112254538 protein_coding
ENST00000431543 (LAMA4-002) 112213543-112254572 protein_coding
ENST00000453937 (LAMA4-010) 112253784-112254578 protein_coding
ENST00000455073 (LAMA4-006) 112253790-112254647 protein_coding
ENST00000518842 (LAMA4-018) 112188892-112191801 retained_intron
ENST00000519245 (LAMA4-020) 112135825-112139276 retained_intron
ENST00000519932 (LAMA4-015) 112207123-112254722 protein_coding
ENST00000521187 (LAMA4-013) 112171630-112179502 retained_intron
ENST00000521398 (LAMA4-011) 112185319-112254485 protein_coding
ENST00000521690 (LAMA4-014) 112216421-112254939 protein_coding
ENST00000521693 (LAMA4-021) 112122061-112130159 retained_intron
ENST00000521732 (LAMA4-007) 112179735-112191811 protein_coding
ENST00000522006 (LAMA4-008) 112108860-112254710 protein_coding
ENST00000523765 (LAMA4-019) 112142144-112165164 nonsense_mediated_decay
ENST00000524032 (LAMA4-017) 112191719-112216754 processed_transcript
ENST00000604740 (LAMA4-022) 112121775-112129988 retained_intron
ENSG00000215807 (KRT18P65)
keratin 18 pseudogene 65 		ENST00000439811 (KRT18P65-001) 112361437-112362722 processed_pseudogene
ENSG00000217770 (FEM1AP3)
fem-1 homolog a (C. elegans) pseudogene 3 		ENST00000403722 (FEM1AP3-001) 112365704-112367444 processed_pseudogene
ENSG00000219773 (RP11-506B6.3)
 ENST00000401872 (RP11-506B6.3-001) 112355841-112356714 processed_pseudogene
ENSG00000225580 (RP1-159M24.1)
 ENST00000418595 (RP1-159M24.1-001) 112616703-112617880 processed_pseudogene
ENSG00000226440 (RP11-506B6.6)
 ENST00000433684 (RP11-506B6.6-001) 112236093-112306683 antisense
ENST00000585450 (RP11-506B6.6-002) 112236806-112306571 antisense
ENST00000585504 (RP11-506B6.6-010) 112236806-112345321 antisense
ENST00000585611 (RP11-506B6.6-008) 112236806-112349918 antisense
ENST00000587816 (RP11-506B6.6-009) 112236806-112350094 antisense
ENST00000588837 (RP11-506B6.6-005) 112236806-112279526 antisense
ENST00000590293 (RP11-506B6.6-006) 112236806-112292832 antisense
ENST00000590584 (RP11-506B6.6-004) 112236806-112306683 antisense
ENST00000590673 (RP11-506B6.6-007) 112236806-112349814 antisense
ENST00000590804 (RP11-506B6.6-003) 112236806-112306679 antisense
ENSG00000251258 (RFPL4B)
ret finger protein-like 4B 		ENST00000441065 (RFPL4B-001) 112347330-112351296 protein_coding
ENSG00000270661 (RP1-142L7.9)
 ENST00000603682 (RP1-142L7.9-001) 112217640-112219570 lincRNA
ENSG00000271208 (RP1-142L7.8)
 ENST00000605586 (RP1-142L7.8-001) 112234165-112234758 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0008LU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1302 VISTA 10090 10:38252269-38856079
GeneTranscriptPositionBiotype
ENSMUSG00000094311 (Rfpl4b)
ret finger protein-like 4B 		ENSMUST00000179279 (Rfpl4b-001) 38820541-38821779 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008LU_0001ENSG00000112769ENST00000230538ENST00000243219ENST00000368638ENST00000368640ENST00000389463ENST00000423735ENST00000424408ENST00000431543ENST00000453937ENST00000455073ENST00000518842ENST00000519245ENST00000519932ENST00000521187ENST00000521398ENST00000521690ENST00000521693ENST00000521732ENST00000522006ENST00000523765ENST00000524032ENST00000604740ENSG00000215807ENST00000439811ENSG00000217770ENST00000403722ENSG00000219773ENST00000401872ENSG00000225580ENST00000418595ENSG00000226440ENST00000433684ENST00000585450ENST00000585504ENST00000585611ENST00000587816ENST00000588837ENST00000590293ENST00000590584ENST00000590673ENST00000590804ENSG00000251258ENST00000441065ENSG00000270661ENST00000603682ENSG00000271208ENST00000605586CIL_0008LU_0002ENSMUSG00000094311ENSMUST00000179279
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008LU_0001ENSG00000112769ENST00000230538ENST00000389463ENST00000424408ENST00000521732ENST00000522006ENSG00000215807ENST00000439811ENSG00000217770ENST00000403722ENSG00000219773ENST00000401872ENSG00000225580ENST00000418595ENSG00000226440ENST00000433684ENST00000585504ENST00000587816ENST00000588837ENST00000590293ENST00000590584ENST00000590673ENST00000590804ENSG00000251258ENST00000441065ENSG00000270661ENST00000603682ENSG00000271208ENST00000605586CIL_0008LU_0002ENSMUSG00000094311ENSMUST00000179279
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000112769 ENST00000230538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.203±0.00 N/A N/A
ENST00000243219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000368638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000368640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000389463 18.521±0.00 5.846±0.00 1.050±0.00 1.210±0.00 18.519±4.50 5.206±0.20 5.064±0.02 N/A 9.255±9.15 10.342±3.64 1.553±0.53 6.822±3.47 13.655±1.55 2.734±0.17
ENST00000423735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424408 23.365±0.00 6.526±0.00 N/A 1.659±0.00 29.520±0.00 6.259±2.74 3.826±0.00 1.477±0.00 0.154±0.00 8.987±0.00 N/A 3.402±0.00 N/A 7.919±0.00
ENST00000431543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521732 N/A N/A N/A N/A N/A N/A N/A 1.377±0.00 N/A N/A N/A N/A N/A N/A
ENST00000522006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.947±0.00 N/A 2.209±0.00
ENST00000523765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000215807 ENST00000439811 N/A N/A N/A 0.070±0.00 N/A N/A N/A N/A 0.029±0.00 0.016±0.00 N/A N/A 0.021±0.00 0.019±0.00
ENSG00000217770 ENST00000403722 N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A 0.101±0.00 N/A N/A 0.975±0.54
ENSG00000219773 ENST00000401872 N/A 0.100±0.00 N/A N/A N/A N/A 0.018±0.00 0.020±0.00 N/A 0.028±0.01 N/A 0.048±0.00 0.094±0.02 N/A
ENSG00000225580 ENST00000418595 0.065±0.00 0.023±0.00 N/A 0.059±0.00 0.011±0.00 0.010±0.00 0.010±0.00 0.046±0.00 0.010±0.00 0.086±0.00 0.010±0.00 0.053±0.00 N/A 0.031±0.00
ENSG00000226440 ENST00000433684 0.021±0.00 N/A 0.192±0.00 N/A N/A 0.714±0.00 N/A N/A N/A N/A N/A 0.064±0.05 0.087±0.00 1.247±0.36
ENST00000585450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585504 N/A 0.079±0.00 N/A 0.043±0.00 0.020±0.00 0.018±0.00 0.037±0.00 N/A N/A 0.107±0.00 N/A N/A N/A N/A
ENST00000585611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.194±0.00 N/A
ENST00000588837 N/A 0.058±0.00 N/A 0.020±0.00 N/A 0.017±0.00 0.018±0.00 N/A N/A N/A 0.017±0.00 N/A N/A N/A
ENST00000590293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A
ENST00000590584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.647±0.00
ENST00000590673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.711±0.00
ENST00000590804 N/A N/A N/A N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000251258 ENST00000441065 0.006±0.00 0.006±0.00 0.030±0.00 N/A 0.022±0.00 N/A N/A 0.074±0.00 N/A N/A N/A 0.015±0.00 0.264±0.16 1.323±0.08
ENSG00000270661 ENST00000603682 0.141±0.00 0.089±0.00 0.144±0.00 0.016±0.00 0.370±0.18 0.616±0.59 0.100±0.08 N/A 1.334±0.00 0.241±0.00 N/A 0.139±0.09 0.045±0.00 0.041±0.02
ENSG00000271208 ENST00000605586 0.096±0.00 0.030±0.00 N/A 0.060±0.00 0.481±0.44 N/A 0.083±0.00 N/A N/A 0.663±0.00 N/A 0.043±0.00 N/A 0.142±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000094311 ENSMUST00000179279 N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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