C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0008TQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs588 VISTA 9606 X:140292334-140893238
GeneTranscriptPositionBiotype
ENSG00000134595 (SOX3)
SRY (sex determining region Y)-box 3
ENST00000370536 (SOX3-001) 140502987-140505503 protein_coding
ENSG00000184258 (CDR1)
cerebellar degeneration-related protein 1, 34kDa
ENST00000370532 (CDR1-001) 140782405-140784871 protein_coding
ENSG00000203930 (LINC00632)
long intergenic non-protein coding RNA 632
ENST00000370535 (LINC00632-002) 140709767-140714822 lincRNA
ENST00000498732 (LINC00632-001) 140709780-140772674 lincRNA
ENST00000602535 (LINC00632-004) 140764578-140772679 lincRNA
ENST00000602830 (LINC00632-003) 140716046-140772343 lincRNA
ENST00000607004 (LINC00632-005) 140709767-140712229 lincRNA
ENSG00000224942 (RP11-51C14.1)
ENST00000420490 (RP11-51C14.1-001) 140397062-140398311 processed_pseudogene
ENSG00000225758 (RPS17P17)
ribosomal protein S17 pseudogene 17
ENST00000419392 (RPS17P17-001) 140470866-140471274 processed_pseudogene
ENSG00000230668 (XXyac-YR29IB3.1)
ENST00000455153 (XXyac-YR29IB3.1-001) 140681106-140687705 lincRNA
ENSG00000263377 (AL121875.1)
ENST00000584172 (AL121875.1-201) 140404099-140404190 miRNA
CIL_0008TQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs588 VISTA 10090 X:60694057-61294970
GeneTranscriptPositionBiotype
ENSMUSG00000045179 (Sox3)
SRY (sex determining region Y)-box 3
ENSMUST00000135107 (Sox3-001) 60891366-60893430 protein_coding
ENSMUSG00000067835 (Gm14661)
predicted gene 14661
ENSMUST00000152669 (Gm14661-001) 60557728-60807993 antisense
ENSMUSG00000071753 (C230004F18Rik)
RIKEN cDNA C230004F18 gene
ENSMUST00000096426 (C230004F18Rik-201) 61116398-61175991 processed_transcript
ENSMUST00000125930 (C230004F18Rik-002) 61116386-61139460 processed_transcript
ENSMUST00000137153 (C230004F18Rik-003) 61116386-61120651 processed_transcript
ENSMUST00000140023 (C230004F18Rik-004) 61116386-61134796 processed_transcript
ENSMUST00000144853 (C230004F18Rik-001) 61116386-61175991 processed_transcript
ENSMUSG00000081323 (Rpl7l1-ps1)
ribosomal protein L7-like 1, pseudogene 1
ENSMUST00000118822 (Rpl7l1-ps1-001) 60971990-60972714 processed_pseudogene
ENSMUSG00000081891 (Gm14660)
predicted gene 14660
ENSMUST00000119809 (Gm14660-001) 60818208-60818782 processed_pseudogene
ENSMUSG00000083463 (Gm4909)
predicted gene 4909
ENSMUST00000118749 (Gm4909-001) 60706270-60707063 processed_pseudogene
ENSMUSG00000083543 (Gm14663)
predicted gene 14663
ENSMUST00000118474 (Gm14663-001) 61090582-61091734 processed_pseudogene
ENSMUSG00000084331 (Gm8163)
predicted gene 8163
ENSMUST00000122020 (Gm8163-001) 60726389-60727448 processed_pseudogene
ENSMUSG00000087401 (Gm14664)
predicted gene 14664
ENSMUST00000142919 (Gm14664-001) 61041741-61076068 lincRNA
ENSMUSG00000087565 (Gm14662)
predicted gene 14662
ENSMUST00000145552 (Gm14662-001) 60893653-60898067 antisense
ENSMUSG00000090546 (Cdr1)
cerebellar degeneration related antigen 1
ENSMUST00000166381 (Cdr1-201) 61183246-61185558 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008TQ_0001ENSG00000134595ENST00000370536ENSG00000184258ENST00000370532ENSG00000203930ENST00000370535ENST00000498732ENST00000602535ENST00000602830ENST00000607004ENSG00000224942ENST00000420490ENSG00000225758ENST00000419392ENSG00000230668ENST00000455153ENSG00000263377ENST00000584172CIL_0008TQ_0002ENSMUSG00000045179ENSMUST00000135107ENSMUSG00000067835ENSMUST00000152669ENSMUSG00000071753ENSMUST00000096426ENSMUST00000125930ENSMUST00000137153ENSMUST00000140023ENSMUST00000144853ENSMUSG00000081323ENSMUST00000118822ENSMUSG00000081891ENSMUST00000119809ENSMUSG00000083463ENSMUST00000118749ENSMUSG00000083543ENSMUST00000118474ENSMUSG00000084331ENSMUST00000122020ENSMUSG00000087401ENSMUST00000142919ENSMUSG00000087565ENSMUST00000145552ENSMUSG00000090546ENSMUST00000166381
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008TQ_0001ENSG00000134595ENST00000370536ENSG00000184258ENST00000370532ENSG00000203930ENST00000370535ENST00000498732ENST00000602535ENST00000602830ENST00000607004ENSG00000224942ENST00000420490ENSG00000225758ENST00000419392ENSG00000230668ENST00000455153ENSG00000263377ENST00000584172CIL_0008TQ_0002ENSMUSG00000045179ENSMUST00000135107ENSMUSG00000067835ENSMUST00000152669ENSMUSG00000071753ENSMUST00000096426ENSMUST00000125930ENSMUST00000137153ENSMUST00000140023ENSMUST00000144853ENSMUSG00000081323ENSMUST00000118822ENSMUSG00000081891ENSMUST00000119809ENSMUSG00000083463ENSMUST00000118749ENSMUSG00000083543ENSMUST00000118474ENSMUSG00000084331ENSMUST00000122020ENSMUSG00000087401ENSMUST00000142919ENSMUSG00000087565ENSMUST00000145552ENSMUSG00000090546ENSMUST00000166381
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134595 ENST00000370536 N/A 0.013±0.00 N/A 0.181±0.16 N/A N/A 0.026±0.00 N/A N/A N/A N/A 0.766±0.71 N/A 1.829±0.22
ENSG00000184258 ENST00000370532 4.338±0.00 1.186±0.00 1.113±0.00 70.831±30.42 7.276±5.06 2.772±1.21 2.079±1.09 0.234±0.19 1.764±1.64 2.193±0.82 1.187±0.56 0.198±0.23 0.023±0.00 0.448±0.33
ENSG00000203930 ENST00000370535 0.146±0.00 0.178±0.00 N/A 3.527±1.69 N/A 0.116±0.00 0.034±0.01 0.204±0.00 0.030±0.00 0.065±0.00 N/A 0.082±0.00 0.029±0.00 0.183±0.00
ENST00000498732 N/A 0.067±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602535 1.177±0.00 0.052±0.00 N/A N/A 4.801±0.00 0.299±0.00 N/A 0.115±0.00 0.468±0.00 0.261±0.00 N/A 0.095±0.00 N/A 0.230±0.08
ENST00000602830 N/A 0.111±0.00 N/A N/A N/A N/A 0.235±0.00 N/A N/A 0.135±0.00 N/A 0.035±0.00 N/A 0.216±0.00
ENST00000607004 N/A N/A N/A N/A N/A N/A 0.261±0.00 N/A N/A N/A N/A N/A N/A 0.048±0.00
ENSG00000224942 ENST00000420490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.050±0.00
ENSG00000225758 ENST00000419392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00
ENSG00000230668 ENST00000455153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.526±0.05
ENSG00000263377 ENST00000584172 N/A N/A N/A 0.181±0.00 N/A N/A N/A N/A 0.183±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000045179 ENSMUST00000135107 0.017±0.00 0.028±0.01 N/A 8.989±6.88 0.014±0.00 0.030±0.01 0.023±0.00 0.013±0.00 0.009±0.01 N/A N/A 6.950±2.53 0.761±0.45 0.991±0.46
ENSMUSG00000067835 ENSMUST00000152669 N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A 0.009±0.00 N/A N/A 0.033±0.01 0.157±0.09 0.018±0.00
ENSMUSG00000071753 ENSMUST00000096426 N/A 0.113±0.00 N/A N/A 0.035±0.00 N/A N/A N/A 0.004±0.00 N/A 0.026±0.00 0.117±0.09 0.003±0.00 0.069±0.03
ENSMUST00000125930 N/A N/A 0.046±0.02 N/A N/A N/A N/A N/A 0.014±0.01 N/A N/A 0.166±0.08 N/A 0.341±0.18
ENSMUST00000137153 N/A 0.122±0.02 0.011±0.00 N/A 0.019±0.00 0.058±0.00 N/A 0.019±0.00 N/A N/A N/A 0.083±0.05 0.005±0.00 0.040±0.00
ENSMUST00000140023 N/A N/A 0.039±0.00 N/A N/A 0.336±0.01 0.117±0.00 N/A N/A 0.216±0.00 N/A N/A N/A N/A
ENSMUST00000144853 N/A 0.114±0.00 0.041±0.00 N/A 0.035±0.00 N/A N/A N/A 0.004±0.00 N/A N/A 0.112±0.00 0.001±0.00 0.059±0.00
ENSMUSG00000081323 ENSMUST00000118822 N/A N/A N/A 0.045±0.00 N/A N/A N/A N/A N/A N/A N/A 0.890±0.00 N/A N/A
ENSMUSG00000081891 ENSMUST00000119809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A
ENSMUSG00000083463 ENSMUST00000118749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A
ENSMUSG00000083543 ENSMUST00000118474 N/A N/A N/A 0.006±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000084331 ENSMUST00000122020 N/A N/A N/A N/A N/A N/A N/A N/A 0.006±0.00 0.037±0.00 N/A 0.038±0.01 0.005±0.00 N/A
ENSMUSG00000087401 ENSMUST00000142919 N/A N/A N/A 0.143±0.08 N/A N/A N/A N/A N/A N/A N/A 0.660±0.09 N/A 0.691±0.40
ENSMUSG00000087565 ENSMUST00000145552 0.060±0.00 0.128±0.00 0.014±0.00 0.519±0.00 N/A N/A N/A N/A 0.054±0.00 N/A N/A 0.365±0.20 0.009±0.00 0.235±0.04
ENSMUSG00000090546 ENSMUST00000166381 0.077±0.04 0.217±0.01 0.095±0.04 10.155±7.88 0.144±0.05 0.128±0.00 0.028±0.00 N/A 0.029±0.04 0.089±0.00 N/A 0.336±0.22 0.026±0.00 0.039±0.02

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