C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135107 Sox3-001 ENSMUSG00000045179 10090 - X:60891366-60893430 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000135107
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000135107 0.017±0.00 0.028±0.01 8.989±6.88 0.014±0.00 0.030±0.01 0.023±0.00 0.013±0.00 0.009±0.01 6.950±2.53 0.761±0.45 0.991±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008R8 CIL_0008R8_0002 VISTA X:60419307-61020575
CIL_0001AO CIL_0001AO_0002 CGP X:60436052-60893430
CIL_0008YR CIL_0008YR_0002 VISTA X:60443793-61045062
CIL_000974 CIL_000974_0002 VISTA X:60598977-61200244
CIL_0008TQ CIL_0008TQ_0002 VISTA X:60694057-61294970
CIL_0007M2 CIL_0007M2_0002 UCNEbase X:60744129-60994835

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0001106 IDA RNA polymerase II transcription corepressor activity
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007423 IMP sensory organ development
GO:0007530 IMP sex determination
GO:0009887 IMP organ morphogenesis
GO:0021854 IMP hypothalamus development
GO:0021983 IMP pituitary gland development
GO:0030900 IMP forebrain development
GO:0045665 ISS negative regulation of neuron differentiation
GO:0048515 IMP spermatid differentiation
GO:0048666 IEA neuron development
GO:0060009 IEP Sertoli cell development
GO:0060324 IMP face development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000010894 sox1b-001 protein_coding Danio_rerio 0 274
ENSDART00000058910 sox19b-001 protein_coding Danio_rerio 0 248
ENST00000250055 SOX15-001 protein_coding Homo_sapiens 1.99993e-41 174
ENST00000325404 SOX2-001 protein_coding Homo_sapiens 0 388
ENST00000330949 SOX1-001 protein_coding Homo_sapiens 0 407
ENST00000370536 SOX3-001 protein_coding Homo_sapiens 0 1978
ENST00000376945 SOX21-001 protein_coding Homo_sapiens 0 348
ENST00000538513 SOX15-002 protein_coding Homo_sapiens 9.99967e-42 174
ENST00000570788 SOX15-003 protein_coding Homo_sapiens 9.99967e-42 174

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