C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008VT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1203 VISTA 9606 3:147784570-148385799
GeneTranscriptPositionBiotype
ENSG00000205412 (HNRNPA1P20)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 20 		ENST00000484852 (HNRNPA1P20-001) 148166344-148167298 processed_pseudogene
ENSG00000239922 (RP11-71N10.1)
 ENST00000467198 (RP11-71N10.1-001) 147940004-147943014 lincRNA
ENST00000485006 (RP11-71N10.1-002) 147940020-148006755 lincRNA
ENSG00000241131 (RP11-639B1.1)
 ENST00000490465 (RP11-639B1.1-001) 148078159-148088029 lincRNA
ENSG00000241792 (RP11-501O2.1)
 ENST00000476987 (RP11-501O2.1-001) 148093175-148127233 lincRNA
ENSG00000242440 (RP11-501O2.5)
 ENST00000469812 (RP11-501O2.5-001) 148280891-148312160 lincRNA
ENST00000481334 (RP11-501O2.5-002) 148312147-148399956 lincRNA
ENSG00000243347 (RP11-501O2.4)
 ENST00000460324 (RP11-501O2.4-001) 148195729-148280098 lincRNA
ENSG00000244650 (RP11-501O2.3)
 ENST00000470219 (RP11-501O2.3-001) 148191719-148226606 lincRNA
ENST00000477153 (RP11-501O2.3-002) 148160911-148226595 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0008VT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1203 VISTA 10090 9:90391309-90992525
GeneTranscriptPositionBiotype
ENSMUSG00000099406 (RP23-480D7.1)
predicted gene 29408 		ENSMUST00000187536 (RP23-480D7.1-001) 90938980-90939195 lincRNA
ENSMUSG00000099512 (RP23-19M11.1)
predicted gene 28703 		ENSMUST00000185312 (RP23-19M11.1-001) 90825302-90828860 lincRNA

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008VT_0001ENSG00000205412ENST00000484852ENSG00000239922ENST00000467198ENST00000485006ENSG00000241131ENST00000490465ENSG00000241792ENST00000476987ENSG00000242440ENST00000469812ENST00000481334ENSG00000243347ENST00000460324ENSG00000244650ENST00000470219ENST00000477153CIL_0008VT_0002ENSMUSG00000099406ENSMUST00000187536ENSMUSG00000099512ENSMUST00000185312
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008VT_0001ENSG00000205412ENST00000484852ENSG00000239922ENST00000467198ENST00000485006ENSG00000241131ENST00000490465ENSG00000241792ENST00000476987ENSG00000242440ENST00000469812ENST00000481334ENSG00000243347ENST00000460324ENSG00000244650ENST00000470219ENST00000477153CIL_0008VT_0002ENSMUSG00000099406ENSMUST00000187536ENSMUSG00000099512ENSMUST00000185312
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000205412 ENST00000484852 0.039±0.00 0.097±0.00 N/A 0.028±0.00 0.014±0.00 0.013±0.00 N/A N/A N/A N/A 0.049±0.00 0.017±0.00 N/A 0.122±0.03
ENSG00000239922 ENST00000467198 0.003±0.00 0.036±0.00 N/A 0.264±0.00 0.039±0.00 0.014±0.00 0.009±0.00 0.006±0.00 0.003±0.00 0.023±0.00 N/A N/A N/A 0.009±0.00
ENST00000485006 N/A N/A N/A 1.279±0.00 N/A N/A 0.033±0.00 N/A N/A N/A N/A N/A N/A 0.210±0.18
ENSG00000241131 ENST00000490465 N/A N/A N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A N/A 6.451±3.50
ENSG00000241792 ENST00000476987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.206±0.02
ENSG00000242440 ENST00000469812 0.053±0.00 N/A N/A N/A N/A N/A 0.049±0.00 N/A 0.047±0.00 0.151±0.00 0.047±0.00 N/A 0.146±0.00 1.107±0.00
ENST00000481334 0.122±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.203±0.00 0.357±0.00
ENSG00000243347 ENST00000460324 N/A N/A N/A 0.055±0.00 N/A 0.018±0.00 N/A N/A 0.017±0.00 N/A N/A N/A N/A 0.492±0.27
ENSG00000244650 ENST00000470219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.101±0.00
ENST00000477153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.100±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000099406 ENSMUST00000187536 42.059±25.00 11.926±4.95 24.466±8.83 8.113±5.97 27.238±20.15 5.827±1.72 92.534±70.75 9.102±4.63 29.775±24.17 16.030±5.43 1.422±0.75 106.030±126.50 17.639±14.65 48.378±47.31
ENSMUSG00000099512 ENSMUST00000185312 N/A N/A 0.007±0.00 0.087±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A

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