C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000484852 HNRNPA1P20-001 ENSG00000205412 9606 - 3:148166344-148167298 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonMuscleOvaryTestisENST00000484852
Transcript ID Adipose Adrenal Brain Breast Colon Muscle Ovary Testis
ENST00000484852 0.039±0.00 0.097±0.00 0.028±0.00 0.014±0.00 0.013±0.00 0.049±0.00 0.017±0.00 0.122±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JF CIL_0007JF_0001 UCNEbase 3:146747615-148369526
CIL_0008F2 CIL_0008F2_0001 VISTA 3:147633889-148235649
CIL_0008PJ CIL_0008PJ_0001 VISTA 3:147730228-148331792
CIL_0008JR CIL_0008JR_0001 VISTA 3:147735523-148337831
CIL_000999 CIL_000999_0001 VISTA 3:147775420-148376460
CIL_00081P CIL_00081P_0001 VISTA 3:147783228-148384382
CIL_0008VT CIL_0008VT_0001 VISTA 3:147784570-148385799
CIL_0008X0 CIL_0008X0_0001 VISTA 3:147988712-148590023
CIL_00085Y CIL_00085Y_0001 VISTA 3:148067478-148670635

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1131
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1127
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 1088
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 1044
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 1026
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 1022
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 883
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 876
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 857
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 841
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 819
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 717
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 1e-32 145
ENSMUST00000183590 Gm5269-002 protein_coding Mus_musculus 2e-20 104

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