C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0009B7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs327 VISTA 9606 1:88161113-88762825
GeneTranscriptPositionBiotype
ENSG00000230053 (RP11-76N22.1)
 ENST00000415219 (RP11-76N22.1-001) 88498309-88498676 processed_pseudogene
ENSG00000237505 (PKN2-AS1)
PKN2 antisense RNA 1 		ENST00000425750 (PKN2-AS1-002) 88540303-88570860 antisense
ENST00000458097 (PKN2-AS1-001) 88537513-88685204 antisense
ENSG00000237959 (RPL36AP10)
ribosomal protein L36a pseudogene 10 		ENST00000421785 (RPL36AP10-001) 88577880-88578201 processed_pseudogene
ENSG00000239504 (RN7SL583P)
RNA, 7SL, cytoplasmic 583, pseudogene 		ENST00000475692 (RN7SL583P-201) 88477828-88478114 misc_RNA
ENSG00000274321 (uc_338)
TUC338 		ENST00000613544 (uc_338.1-205) 88520000-88520170 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0009B7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs327 VISTA 10090 3:142800891-143402626
GeneTranscriptPositionBiotype
ENSMUSG00000004591 (Pkn2)
protein kinase N2 		ENSMUST00000043812 (Pkn2-001) 142790902-142882004 protein_coding
ENSMUST00000166330 (Pkn2-003) 142799952-142881920 processed_transcript
ENSMUST00000172521 (Pkn2-002) 142804789-142881990 processed_transcript
ENSMUST00000172916 (Pkn2-004) 142830238-142881983 retained_intron
ENSMUST00000173615 (Pkn2-011) 142809642-142821598 nonsense_mediated_decay
ENSMUST00000173830 (Pkn2-007) 142793811-142881658 protein_coding
ENSMUST00000173913 (Pkn2-006) 142793709-142881915 nonsense_mediated_decay
ENSMUST00000174099 (Pkn2-008) 142821309-142829258 retained_intron
ENSMUST00000174169 (Pkn2-010) 142810759-142812582 retained_intron
ENSMUST00000174422 (Pkn2-005) 142793811-142881658 protein_coding
ENSMUST00000174680 (Pkn2-009) 142811553-142829295 protein_coding
ENSMUSG00000078162 (Gm2574)
predicted pseudogene 2574 		ENSMUST00000181051 (Gm2574-001) 142962561-142963792 processed_pseudogene
ENSMUSG00000097858 (9530052C20Rik)
RIKEN cDNA 9530052C20 gene 		ENSMUST00000181882 (9530052C20Rik-201) 142882495-142894644 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009B7_0001ENSG00000230053ENST00000415219ENSG00000237505ENST00000425750ENST00000458097ENSG00000237959ENST00000421785ENSG00000239504ENST00000475692ENSG00000274321ENST00000613544CIL_0009B7_0002ENSMUSG00000004591ENSMUST00000043812ENSMUST00000166330ENSMUST00000172521ENSMUST00000172916ENSMUST00000173615ENSMUST00000173830ENSMUST00000173913ENSMUST00000174099ENSMUST00000174169ENSMUST00000174422ENSMUST00000174680ENSMUSG00000078162ENSMUST00000181051ENSMUSG00000097858ENSMUST00000181882
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009B7_0001ENSG00000230053ENST00000415219ENSG00000237505ENST00000425750ENST00000458097ENSG00000237959ENST00000421785ENSG00000239504ENST00000475692ENSG00000274321ENST00000613544CIL_0009B7_0002ENSMUSG00000004591ENSMUST00000043812ENSMUST00000172521ENSMUST00000172916ENSMUST00000173830ENSMUST00000173913ENSMUST00000174422ENSMUSG00000078162ENSMUST00000181051ENSMUSG00000097858ENSMUST00000181882
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000230053 ENST00000415219 N/A 0.169±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.212±0.04
ENSG00000237505 ENST00000425750 0.116±0.00 0.085±0.00 N/A 0.213±0.11 0.025±0.00 N/A N/A N/A N/A 0.227±0.06 0.052±0.00 0.130±0.03 0.075±0.03 0.156±0.05
ENST00000458097 N/A 0.020±0.00 N/A 0.017±0.00 0.033±0.00 0.019±0.00 N/A 0.013±0.00 N/A N/A N/A 0.014±0.01 0.036±0.01 0.016±0.00
ENSG00000237959 ENST00000421785 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.045±0.00 N/A 0.152±0.00 N/A N/A
ENSG00000239504 ENST00000475692 N/A N/A N/A 0.072±0.00 0.206±0.00 0.247±0.00 N/A N/A N/A N/A N/A N/A N/A 0.241±0.06
ENSG00000274321 ENST00000613544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.318±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004591 ENSMUST00000043812 6.815±2.00 4.015±0.62 4.427±1.02 4.001±0.39 5.804±0.62 5.132±1.01 3.597±0.80 6.086±0.90 5.581±3.20 7.905±1.40 0.948±0.24 7.127±0.76 8.165±4.41 3.799±0.82
ENSMUST00000166330 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172521 3.150±0.00 2.602±0.00 N/A N/A 2.206±0.00 4.338±0.17 N/A 2.809±0.53 0.784±0.00 3.121±0.00 N/A 3.805±0.00 N/A 3.652±0.59
ENSMUST00000172916 N/A 37.298±12.60 N/A 3.380±0.00 24.496±1.80 18.237±2.96 N/A 10.473±0.00 1.853±0.00 17.632±8.42 N/A 28.769±6.58 62.856±8.73 13.221±0.00
ENSMUST00000173615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173830 N/A N/A N/A 4.707±0.00 N/A N/A N/A N/A N/A N/A N/A 12.742±0.00 13.698±0.00 8.062±0.00
ENSMUST00000173913 N/A N/A N/A N/A N/A N/A 1.080±0.00 N/A N/A N/A N/A N/A 13.587±2.35 3.775±0.77
ENSMUST00000174099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.609±0.00 24.285±4.07 14.546±0.00
ENSMUST00000174680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000078162 ENSMUST00000181051 0.063±0.02 0.067±0.01 0.042±0.01 5.186±7.26 0.058±0.01 0.095±0.05 0.054±0.02 0.054±0.01 4.826±11.71 0.030±0.00 0.104±0.08 0.091±0.04 0.077±0.06 0.130±0.08
ENSMUSG00000097858 ENSMUST00000181882 0.151±0.02 0.156±0.06 0.754±0.32 0.166±0.11 0.090±0.04 0.096±0.05 0.061±0.02 0.144±0.05 0.500±0.14 0.146±0.11 0.097±0.05 0.216±0.13 0.177±0.07 0.363±0.13

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