C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: ribosomal protein L36a pseudogene 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000421785 RPL36AP10-001 ENSG00000237959 9606 + 1:88577880-88578201 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungOvaryENST00000421785
Transcript ID Lung Ovary
ENST00000421785 0.045±0.00 0.152±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095Q CIL_00095Q_0001 VISTA 1:88076052-88677408
CIL_0008RA CIL_0008RA_0001 VISTA 1:88110048-88711509
CIL_0009B7 CIL_0009B7_0001 VISTA 1:88161113-88762825

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 357
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 357
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 357
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 357
ENSMUST00000054544 Rpl36al-001 protein_coding Mus_musculus 0 285
ENSMUST00000110619 Rpl36al-002 protein_coding Mus_musculus 0 285
ENSMUST00000110620 Rpl36al-003 protein_coding Mus_musculus 0 285
ENSMUST00000120093 Rpl36a-ps3-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000121439 Gm12936-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000169457 Rpl36a-006 retained_intron Mus_musculus 3.99931e-42 174

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