C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000010997 tpm3-003 ENSDARG00000005162 7955 - 19:11478788-11505488 protein_coding

Danio rerio EnsemblZv9

Genome
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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000010997
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000010997 13.157±2.75 26.732±10.01 42.633±3.93 5.239±0.00 12.455±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030185 Tpm1-002 protein_coding Mus_musculus 0 409
ENSMUST00000034928 Tpm1-008 protein_coding Mus_musculus 0 416
ENSMUST00000050905 Tpm1-004 protein_coding Mus_musculus 0 420
ENSMUST00000113684 Tpm1-020 protein_coding Mus_musculus 0 420
ENSMUST00000113685 Tpm1-003 protein_coding Mus_musculus 0 409
ENSMUST00000113686 Tpm1-014 protein_coding Mus_musculus 0 409
ENSMUST00000113687 Tpm1-012 protein_coding Mus_musculus 0 409
ENSMUST00000113689 Tpm1-021 protein_coding Mus_musculus 0 420
ENSMUST00000113690 Tpm1-013 protein_coding Mus_musculus 0 409
ENSMUST00000113693 Tpm1-011 protein_coding Mus_musculus 0 409
ENSMUST00000113695 Tpm1-016 protein_coding Mus_musculus 0 416
ENSMUST00000113696 Tpm1-015 protein_coding Mus_musculus 0 427
ENSMUST00000113697 Tpm1-006 protein_coding Mus_musculus 0 427
ENSMUST00000113701 Tpm1-010 protein_coding Mus_musculus 0 431
ENSMUST00000113705 Tpm1-007 protein_coding Mus_musculus 0 420
ENSMUST00000113707 Tpm1-001 protein_coding Mus_musculus 0 416
ENSMUST00000129466 Tpm1-019 retained_intron Mus_musculus 0 320
ENSMUST00000129733 Tpm1-009 nonsense_mediated_decay Mus_musculus 6.00036e-42 176
ENSMUST00000131279 Tpm1-018 processed_transcript Mus_musculus 0 281

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