C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 1, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113696 Tpm1-015 ENSMUSG00000032366 10090 - 9:67022590-67043907 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyLiverLungOvaryTestisENSMUST00000113696
Transcript ID Adipose Adrenal Brain Breast Kidney Liver Lung Ovary Testis
ENSMUST00000113696 19.803±1.60 18.454±6.13 14.165±1.89 25.569±4.52 18.647±1.77 34.365±32.96 48.968±10.13 45.011±2.61 2.703±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098V CIL_00098V_0002 VISTA 9:66700483-67304558
CIL_00094O CIL_00094O_0002 VISTA 9:66740666-67343521
CIL_0004OW CIL_0004OW_0002 CGP 9:66955393-67049406
CIL_0005H2 CIL_0005H2_0002 CGP 9:67022590-67559703

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005737 IDA cytoplasm
GO:0005862 TAS muscle thin filament tropomyosin
GO:0030016 IDA myofibril
GO:0031941 IDA filamentous actin

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000131098 TPM1-201 protein_coding Danio_rerio 0 468
ENSDART00000121680 TPM1-202 protein_coding Danio_rerio 0 440
ENSDART00000054763 tpma-202 protein_coding Danio_rerio 0 436
ENSDART00000039657 tpma-201 protein_coding Danio_rerio 0 436
ENSDART00000010997 tpm3-003 protein_coding Danio_rerio 0 427
ENSDART00000014851 TPM1-203 protein_coding Danio_rerio 0 424
ENSDART00000151375 tpm3-004 protein_coding Danio_rerio 0 394
ENSDART00000027598 tpm3-001 protein_coding Danio_rerio 0 387
ENSDART00000125892 TPM1-204 protein_coding Danio_rerio 0 375
ENST00000267996 TPM1-005 protein_coding Homo_sapiens 0 1053
ENST00000288398 TPM1-001 protein_coding Homo_sapiens 0 819
ENST00000317516 TPM1-016 protein_coding Homo_sapiens 0 996
ENST00000329305 TPM2-006 protein_coding Homo_sapiens 0 322
ENST00000334895 TPM1-011 protein_coding Homo_sapiens 0 848
ENST00000357980 TPM1-008 protein_coding Homo_sapiens 0 1048
ENST00000358278 TPM1-018 protein_coding Homo_sapiens 0 1192
ENST00000360958 TPM2-002 protein_coding Homo_sapiens 0 298
ENST00000378292 TPM2-001 protein_coding Homo_sapiens 0 366
ENST00000378300 TPM2-005 protein_coding Homo_sapiens 0 302
ENST00000403994 TPM1-002 protein_coding Homo_sapiens 0 664
ENST00000404484 TPM1-012 protein_coding Homo_sapiens 0 1371
ENST00000471212 TPM2-003 retained_intron Homo_sapiens 0 272
ENST00000558072 TPM1-025 retained_intron Homo_sapiens 0 364
ENST00000558264 TPM1-017 nonsense_mediated_decay Homo_sapiens 0 632
ENST00000558314 TPM1-006 retained_intron Homo_sapiens 0 617
ENST00000558347 TPM1-009 nonsense_mediated_decay Homo_sapiens 0 822
ENST00000558400 TPM1-030 retained_intron Homo_sapiens 0 381
ENST00000558544 TPM1-013 nonsense_mediated_decay Homo_sapiens 0 989
ENST00000558868 TPM1-021 retained_intron Homo_sapiens 0 682
ENST00000559108 TPM1-031 retained_intron Homo_sapiens 0 191
ENST00000559281 TPM1-015 protein_coding Homo_sapiens 0 841
ENST00000559397 TPM1-010 protein_coding Homo_sapiens 0 1192
ENST00000559556 TPM1-028 protein_coding Homo_sapiens 0 837
ENST00000559831 TPM1-029 nonsense_mediated_decay Homo_sapiens 0 632
ENST00000560615 TPM1-022 protein_coding Homo_sapiens 0 710
ENST00000560679 TPM1-024 protein_coding Homo_sapiens 0 244
ENST00000560959 TPM1-014 protein_coding Homo_sapiens 0 996
ENST00000560970 TPM1-003 protein_coding Homo_sapiens 0 664
ENST00000560975 TPM1-007 retained_intron Homo_sapiens 0 634
ENST00000561242 TPM1-032 retained_intron Homo_sapiens 0.000000000003 77
ENST00000561266 TPM1-027 protein_coding Homo_sapiens 0 664
ENST00000561395 TPM1-033 nonsense_mediated_decay Homo_sapiens 0 283

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