C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage and polyadenylation specific factor 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000023721 cpsf5-001 ENSDARG00000003153 7955 - 18:22502262-22515713 protein_coding

Danio rerio EnsemblZv9

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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000023721
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000023721 12.874±4.31 7.586±2.05 18.094±5.79 0.825±0.00 2.887±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0005634 IEA nucleus
GO:0005849 IEA mRNA cleavage factor complex
GO:0006378 IEA mRNA polyadenylation
GO:0006397 IEA mRNA processing
GO:0016787 IEA hydrolase activity
GO:0017091 ISS AU-rich element binding
GO:0042382 ISS paraspeckles

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034204 Nudt21-201 protein_coding Mus_musculus 0 451
ENSMUST00000117148 Gm7488-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000117471 Gm13728-001 processed_pseudogene Mus_musculus 1e-28 130

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