C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nudix (nucleoside diphosphate linked moiety X)-type motif 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034204 Nudt21-201 ENSMUSG00000031754 10090 - 8:94017770-94037021 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034204
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034204 11.788±7.81 121.518±35.67 9.614±1.68 14.393±7.42 35.063±29.93 56.981±4.88 3.450±1.22 9.264±6.95 14.191±5.52 22.998±11.32 2.439±0.31 75.727±52.10 10.470±3.88 6.075±0.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00048T CIL_00048T_0002 CGP 8:93971588-94037021
CIL_00048W CIL_00048W_0002 CGP 8:94017770-94067921

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003729 ISS mRNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005813 IEA centrosome
GO:0005849 ISS mRNA cleavage factor complex
GO:0006378 ISS mRNA polyadenylation
GO:0006397 ISS mRNA processing
GO:0016787 IEA hydrolase activity
GO:0017091 ISS AU-rich element binding
GO:0042382 ISS paraspeckles
GO:0042803 IEA protein homodimerization activity
GO:0042826 IEA histone deacetylase binding
GO:0044822 IEA poly(A) RNA binding
GO:0051262 IEA protein tetramerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000023721 cpsf5-001 protein_coding Danio_rerio 0 451
ENST00000300291 NUDT21-001 protein_coding Homo_sapiens 0 1214
ENST00000563362 NUDT21-006 retained_intron Homo_sapiens 1e-23 113
ENST00000563860 NUDT21-007 retained_intron Homo_sapiens 0 303
ENST00000566340 NUDT21-003 protein_coding Homo_sapiens 0 793
ENST00000567110 NUDT21-004 retained_intron Homo_sapiens 0 520
ENST00000568822 NUDT21-005 protein_coding Homo_sapiens 0 429
ENST00000612596 NUDT21-008 retained_intron Homo_sapiens 2e-23 113

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