C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000045942 phf2-001 ENSDARG00000018691 7955 - 11:28521364-28579618 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverENSDART00000045942
Transcript ID Brain Heart Kidney Liver
ENSDART00000045942 3.775±1.92 3.160±0.00 4.075±0.00 0.078±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000W6 CIL_0000W6_0001 CGP 11:28419933-28579618
CIL_0000W5 CIL_0000W5_0001 CGP 11:28521364-28615329

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 ISS transcription coactivator activity
GO:0005506 ISS iron ion binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 ISS nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006482 ISS protein demethylation
GO:0008270 IEA zinc ion binding
GO:0016491 IEA oxidoreductase activity
GO:0016568 IEA chromatin modification
GO:0032454 ISS histone demethylase activity (H3-K9 specific)
GO:0033169 ISS histone H3-K9 demethylation
GO:0035064 ISS methylated histone residue binding
GO:0046872 IEA metal ion binding
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process
GO:0061188 ISS negative regulation of chromatin silencing at rDNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359246 PHF2-001 protein_coding Homo_sapiens 3e-20 106
ENST00000375376 PHF2-201 protein_coding Homo_sapiens 2e-20 106
ENST00000610682 PHF2-202 protein_coding Homo_sapiens 1e-20 106

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