C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359246 PHF2-001 ENSG00000197724 9606 + 9:93576407-93679587 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359246
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359246 11.270±0.00 7.159±0.00 1.018±0.00 3.937±2.95 3.657±2.10 4.772±2.79 6.899±0.00 2.624±1.58 2.644±1.05 6.552±3.14 4.851±3.15 11.886±4.35 7.876±0.86 4.791±0.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QG CIL_0008QG_0001 VISTA 9:93400439-94002641
CIL_0008WO CIL_0008WO_0001 VISTA 9:93563376-94165036

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001889 TAS liver development
GO:0003713 IDA transcription coactivator activity
GO:0005506 IDA iron ion binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006482 IDA protein demethylation
GO:0008270 IDA:IEA zinc ion binding
GO:0032454 IDA histone demethylase activity (H3-K9 specific)
GO:0033169 IEA histone H3-K9 demethylation
GO:0035064 IDA methylated histone binding
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process
GO:0061188 IMP negative regulation of chromatin silencing at rDNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035540 Phf2-201 protein_coding Mus_musculus 0 4078
ENSMUST00000002305 Kdm7a-001 protein_coding Mus_musculus 5e-33 148
ENSDART00000045942 phf2-001 protein_coding Danio_rerio 3e-20 106

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