C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoic acid receptor gamma a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000049551 rarga-001 ENSDARG00000034117 7955 + 23:35970074-36015279 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverENSDART00000049551
Transcript ID Brain Heart Liver
ENSDART00000049551 2.631±0.00 11.873±0.00 0.257±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001889 IMP liver development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003708 IEA retinoic acid receptor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding
GO:0048384 IEA retinoic acid receptor signaling pathway
GO:0060037 IDA pharyngeal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330688 RARB-001 protein_coding Homo_sapiens 0 444
ENST00000383772 RARB-005 protein_coding Homo_sapiens 0 427
ENST00000437042 RARB-002 protein_coding Homo_sapiens 0 444
ENST00000458646 RARB-004 protein_coding Homo_sapiens 0 444
ENST00000462272 RARB-008 processed_transcript Homo_sapiens 0 311
ENST00000479097 RARB-009 processed_transcript Homo_sapiens 1.00053e-42 178
ENST00000480001 RARB-007 processed_transcript Homo_sapiens 0 311
ENST00000489694 RARB-006 processed_transcript Homo_sapiens 4e-20 102

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