C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoic acid receptor, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000383772 RARB-005 ENSG00000077092 9606 + 3:25174332-25596455 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003708 IEA retinoic acid receptor activity
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007165 TAS signal transduction
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0048384 IEA retinoic acid receptor signaling pathway
GO:0048566 IMP embryonic digestive tract development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000063750 Rarb-201 protein_coding Mus_musculus 0 1393
ENSMUST00000164748 Rara-201 protein_coding Mus_musculus 0 569
ENSMUST00000068133 Rara-001 protein_coding Mus_musculus 0 569
ENSMUST00000107475 Rara-002 protein_coding Mus_musculus 0 569
ENSMUST00000107474 Rara-003 protein_coding Mus_musculus 0 569
ENSMUST00000107473 Rara-004 protein_coding Mus_musculus 0 553
ENSDART00000103158 rarga-201 protein_coding Danio_rerio 0 427
ENSDART00000049551 rarga-001 protein_coding Danio_rerio 0 427
ENSDART00000143935 rarga-003 protein_coding Danio_rerio 1.00053e-42 178
ENSDART00000129222 rarga-002 protein_coding Danio_rerio 1.00053e-42 178

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