C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intermediate filament family orphan 2a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000089379 iffo2a-201 ENSDARG00000062101 7955 + 23:21674317-21708434 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENSDART00000089379
Transcript ID Muscle
ENSDART00000089379 0.212±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WQ CIL_0003WQ_0001 CGP 23:21573096-21712014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051171 Iffo1-201 protein_coding Mus_musculus 0 207
ENSMUST00000088276 Iffo1-202 protein_coding Mus_musculus 0 207
ENSMUST00000117675 Iffo1-002 protein_coding Mus_musculus 0 207
ENSMUST00000119527 Iffo1-001 protein_coding Mus_musculus 0 207
ENSMUST00000135559 Iffo1-003 retained_intron Mus_musculus 0 207
ENSMUST00000139071 Iffo1-008 retained_intron Mus_musculus 0 195
ENSMUST00000141230 Iffo1-004 retained_intron Mus_musculus 0 195
ENSMUST00000144364 Iffo1-005 nonsense_mediated_decay Mus_musculus 0 211
ENSMUST00000148835 Iffo1-007 protein_coding Mus_musculus 0 211
ENSMUST00000150474 Iffo1-010 retained_intron Mus_musculus 0 195

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