C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin, beta, non-erythrocytic 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000157340 SPTBN5-001 ENSDARG00000097683 7955 - 17:29183231-29253329 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000157340
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000157340 0.107±0.08 0.167±0.08 1.017±0.75 0.003±0.00 0.090±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IR CIL_0005IR_0001 CGP 17:29183231-29272820

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044217 Syne2-201 protein_coding Mus_musculus 0.00003 58
ENSMUST00000143031 Syne2-001 protein_coding Mus_musculus 0.00003 58
ENSMUST00000150317 Syne2-003 protein_coding Mus_musculus 0.000003 58
ENSMUST00000157033 Syne2-004 retained_intron Mus_musculus 0.000003 58

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