C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin repeat containing, nuclear envelope 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044217 Syne2-201 ENSMUSG00000063450 10090 + 12:75818318-76110900 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverMuscleENSMUST00000044217
Transcript ID Breast Liver Muscle
ENSMUST00000044217 0.634±0.00 0.191±0.01 0.214±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004WO CIL_0004WO_0002 CGP 12:75714248-76110926
CIL_00010O CIL_00010O_0002 CGP 12:75818134-76177259

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA:IDA actin binding
GO:0005634 IEA nucleus
GO:0005635 IDA nuclear envelope
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005925 IEA focal adhesion
GO:0006998 IMP nuclear envelope organization
GO:0007097 IEA nuclear migration
GO:0007163 IMP establishment or maintenance of cell polarity
GO:0010761 IMP fibroblast migration
GO:0016021 IEA integral component of membrane
GO:0016235 IEA aggresome
GO:0016529 IEA sarcoplasmic reticulum
GO:0030016 IDA myofibril
GO:0030018 IDA Z disc
GO:0030335 IMP positive regulation of cell migration
GO:0031022 IMP nuclear migration along microfilament
GO:0031258 IEA lamellipodium membrane
GO:0031527 IEA filopodium membrane
GO:0031965 IDA nuclear membrane
GO:0031981 IEA nuclear lumen
GO:0034504 IMP protein localization to nucleus
GO:0034993 IEA SUN-KASH complex
GO:0045111 IEA intermediate filament cytoskeleton
GO:0051642 IMP centrosome localization
GO:0090286 IEA cytoskeletal anchoring at nuclear membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000157340 SPTBN5-001 protein_coding Danio_rerio 0.00003 58
ENST00000341472 SYNE2-004 protein_coding Homo_sapiens 0 889
ENST00000344113 SYNE2-001 protein_coding Homo_sapiens 0 10920
ENST00000357395 SYNE2-201 protein_coding Homo_sapiens 0 2302
ENST00000358025 SYNE2-202 protein_coding Homo_sapiens 0 10170
ENST00000394768 SYNE2-014 protein_coding Homo_sapiens 0 6918
ENST00000441438 SYNE2-007 protein_coding Homo_sapiens 0 289
ENST00000458046 SYNE2-006 protein_coding Homo_sapiens 0 289
ENST00000553289 SYNE2-013 nonsense_mediated_decay Homo_sapiens 0 2342
ENST00000553308 SYNE2-025 protein_coding Homo_sapiens 0 296
ENST00000553801 SYNE2-016 processed_transcript Homo_sapiens 0 298
ENST00000553806 SYNE2-019 retained_intron Homo_sapiens 0 800
ENST00000554584 SYNE2-002 protein_coding Homo_sapiens 0 2302
ENST00000554805 SYNE2-005 protein_coding Homo_sapiens 0 1844
ENST00000554997 SYNE2-020 retained_intron Homo_sapiens 0 518
ENST00000555002 SYNE2-011 protein_coding Homo_sapiens 0 7060
ENST00000555022 SYNE2-009 protein_coding Homo_sapiens 0 2109
ENST00000555241 SYNE2-018 processed_transcript Homo_sapiens 0 436
ENST00000555612 SYNE2-008 nonsense_mediated_decay Homo_sapiens 0 2466
ENST00000556906 SYNE2-017 protein_coding Homo_sapiens 0 656
ENST00000557005 SYNE2-003 retained_intron Homo_sapiens 0 1382
ENST00000557084 SYNE2-022 nonsense_mediated_decay Homo_sapiens 0 457

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