C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: oculocerebrorenal syndrome of Lowe
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001202 Ocrl-001 ENSMUSG00000001173 10090 + X:47912387-47965868 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001202
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001202 1.007±0.17 3.190±0.12 4.048±1.34 0.692±0.08 0.782±0.00 0.623±0.08 0.544±0.33 1.109±0.25 1.396±0.58 3.499±1.74 0.934±0.43 0.503±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000A1 CIL_0000A1_0002 CGP X:47809368-47965868

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IGI in utero embryonic development
GO:0001750 IEA photoreceptor outer segment
GO:0004439 IDA phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005769 IEA early endosome
GO:0005794 ISS Golgi apparatus
GO:0005802 IEA trans-Golgi network
GO:0005886 IEA plasma membrane
GO:0005905 IEA coated pit
GO:0007165 IEA signal transduction
GO:0030136 IEA clathrin-coated vesicle
GO:0030675 IEA Rac GTPase activator activity
GO:0032314 IEA regulation of Rac GTPase activity
GO:0032855 IEA positive regulation of Rac GTPase activity
GO:0042384 IEA cilium assembly
GO:0046856 IDA phosphatidylinositol dephosphorylation
GO:0048365 IEA Rac GTPase binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357121 OCRL-002 protein_coding Homo_sapiens 0 3733
ENST00000371113 OCRL-001 protein_coding Homo_sapiens 0 3877
ENST00000463271 OCRL-005 processed_transcript Homo_sapiens 0 545
ENST00000486673 OCRL-003 processed_transcript Homo_sapiens 0 501

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