C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000A1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000102038-ENSG00000122126 CGP 9606 X:129446501-129592561
GeneTranscriptPositionBiotype
ENSG00000102038 (SMARCA1)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 		ENST00000371121 (SMARCA1-005) 129446846-129523405 protein_coding
ENST00000371122 (SMARCA1-004) 129446505-129523500 protein_coding
ENST00000371123 (SMARCA1-006) 129446506-129523485 protein_coding
ENST00000478420 (SMARCA1-003) 129508055-129523246 processed_transcript
ENST00000617310 (SMARCA1-007) 129446501-129523464 retained_intron
ENSG00000122126 (OCRL)
oculocerebrorenal syndrome of Lowe 		ENST00000357121 (OCRL-002) 129540275-129592561 protein_coding
ENST00000371113 (OCRL-001) 129540275-129592561 protein_coding
ENST00000463271 (OCRL-005) 129589589-129590633 processed_transcript
ENST00000486673 (OCRL-003) 129539849-129558979 processed_transcript
CIL_0000A1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031099-ENSMUSG00000001173 CGP 10090 X:47809368-47965868
GeneTranscriptPositionBiotype
ENSMUSG00000001173 (Ocrl)
oculocerebrorenal syndrome of Lowe 		ENSMUST00000001202 (Ocrl-001) 47912387-47965868 protein_coding
ENSMUST00000115013 (Ocrl-005) 47960289-47965763 protein_coding
ENSMUST00000115020 (Ocrl-004) 47912438-47957092 protein_coding
ENSMUST00000142719 (Ocrl-003) 47912455-47957075 processed_transcript
ENSMUST00000144664 (Ocrl-002) 47912467-47915582 retained_intron
ENSMUST00000146486 (Ocrl-006) 47930178-47931320 retained_intron
ENSMUST00000154732 (Ocrl-007) 47938391-47948233 protein_coding
ENSMUSG00000031099 (Smarca1)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 		ENSMUST00000077569 (Smarca1-001) 47809368-47892519 protein_coding
ENSMUST00000088973 (Smarca1-007) 47809633-47892552 protein_coding
ENSMUST00000101616 (Smarca1-002) 47809370-47892519 protein_coding
ENSMUST00000140756 (Smarca1-006) 47889808-47892974 processed_transcript
ENSMUST00000141084 (Smarca1-003) 47874330-47892432 protein_coding
ENSMUST00000153548 (Smarca1-004) 47841930-47892396 protein_coding
ENSMUST00000153587 (Smarca1-005) 47887141-47892941 protein_coding
ENSMUSG00000068014 (Gm14648)
predicted gene 14648 		ENSMUST00000119328 (Gm14648-001) 47900345-47900827 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000A1_0001ENSG00000102038ENST00000371121ENST00000371122ENST00000371123ENST00000478420ENST00000617310ENSG00000122126ENST00000357121ENST00000371113ENST00000463271ENST00000486673CIL_0000A1_0002ENSMUSG00000001173ENSMUST00000001202ENSMUST00000115013ENSMUST00000115020ENSMUST00000142719ENSMUST00000144664ENSMUST00000146486ENSMUST00000154732ENSMUSG00000031099ENSMUST00000077569ENSMUST00000088973ENSMUST00000101616ENSMUST00000140756ENSMUST00000141084ENSMUST00000153548ENSMUST00000153587ENSMUSG00000068014ENSMUST00000119328
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000A1_0001ENSG00000102038ENST00000371121ENST00000371122ENST00000371123ENST00000617310ENSG00000122126ENST00000357121ENST00000371113CIL_0000A1_0002ENSMUSG00000001173ENSMUST00000001202ENSMUST00000115013ENSMUST00000115020ENSMUST00000154732ENSMUSG00000031099ENSMUST00000077569ENSMUST00000088973ENSMUST00000101616ENSMUST00000153548ENSMUST00000153587ENSMUSG00000068014ENSMUST00000119328
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000102038 ENST00000371121 3.624±0.00 3.299±0.00 N/A 3.481±0.00 3.035±0.00 6.323±0.00 3.468±0.00 5.607±0.00 2.055±0.00 4.853±0.03 1.515±0.55 5.335±3.79 6.585±6.81 12.074±1.68
ENST00000371122 N/A N/A 2.327±0.00 1.638±0.06 1.462±0.70 0.521±0.00 0.943±0.18 3.295±0.00 2.411±0.64 1.237±0.00 N/A 3.114±1.85 2.801±2.35 10.158±3.51
ENST00000371123 1.633±0.00 N/A N/A 4.876±1.53 1.311±0.00 0.729±0.00 2.669±1.04 5.458±1.93 4.187±0.00 3.175±0.00 2.469±0.00 5.861±2.90 3.888±0.94 15.173±1.82
ENST00000478420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617310 N/A N/A 0.372±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000122126 ENST00000357121 8.041±0.00 2.600±0.00 N/A 2.486±0.13 3.984±0.84 4.191±2.00 0.810±0.71 3.430±1.22 1.461±0.38 1.683±1.16 0.332±0.00 6.903±0.15 5.480±1.47 18.165±6.41
ENST00000371113 N/A 0.873±0.00 N/A 4.642±4.07 N/A N/A 1.511±0.00 N/A N/A 1.172±0.00 4.522±0.00 3.219±0.69 N/A 6.727±0.00
ENST00000463271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001173 ENSMUST00000001202 1.007±0.17 N/A 3.190±0.12 4.048±1.34 N/A 0.692±0.08 0.782±0.00 0.623±0.08 0.544±0.33 1.109±0.25 1.396±0.58 3.499±1.74 0.934±0.43 0.503±0.14
ENSMUST00000115013 7.587±2.07 12.545±3.13 7.426±1.55 7.564±1.98 6.108±2.22 5.320±1.13 3.164±0.35 3.194±0.64 1.743±0.69 5.000±2.64 1.903±0.50 9.689±3.04 1.832±0.72 1.618±0.67
ENSMUST00000115020 N/A 3.131±0.00 N/A N/A 1.273±0.08 1.105±0.00 1.017±0.00 N/A 0.329±0.00 N/A N/A 1.922±0.24 N/A N/A
ENSMUST00000142719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154732 N/A N/A N/A 14.960±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.028±0.00
ENSMUSG00000031099 ENSMUST00000077569 N/A 0.714±0.00 N/A N/A N/A 0.040±0.02 N/A 0.037±0.01 N/A N/A N/A 4.770±0.00 0.241±0.00 N/A
ENSMUST00000088973 0.166±0.13 1.767±1.77 0.200±0.07 3.624±1.42 0.452±0.22 0.166±0.02 0.151±0.04 0.059±0.03 0.451±0.33 0.235±0.03 0.227±0.08 6.681±4.16 0.925±0.64 0.593±0.18
ENSMUST00000101616 0.030±0.00 N/A 0.295±0.03 3.055±1.88 0.180±0.00 0.037±0.02 0.058±0.00 0.038±0.01 0.411±0.09 N/A 0.099±0.06 7.756±3.87 1.605±0.51 1.022±0.52
ENSMUST00000140756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153548 0.080±0.02 N/A N/A 6.410±0.00 0.487±0.00 0.025±0.00 N/A 0.082±0.05 0.048±0.02 N/A N/A 21.414±9.87 1.130±0.11 0.486±0.34
ENSMUST00000153587 1.168±0.69 3.131±1.15 N/A N/A 0.419±0.00 0.223±0.01 N/A 0.255±0.06 N/A 0.754±0.00 N/A 7.484±1.01 N/A N/A
ENSMUSG00000068014 ENSMUST00000119328 N/A N/A 0.046±0.00 0.110±0.04 0.160±0.00 N/A 0.103±0.00 0.106±0.01 0.176±0.06 N/A 0.139±0.05 0.137±0.00 0.047±0.05 N/A

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