C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP6 pre-mRNA splicing factor 6 homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002529 Prpf6-201 ENSMUSG00000002455 10090 + 2:181601319-181655660 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLungOvaryTestisENSMUST00000002529
Transcript ID Adipose Breast Colon Heart Kidney Lung Ovary Testis
ENSMUST00000002529 3.339±1.81 1.030±0.00 1.367±0.00 0.975±0.11 2.032±0.79 1.230±0.00 13.612±6.36 2.068±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004F5 CIL_0004F5_0002 CGP 2:181569149-181592803

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003713 ISO transcription coactivator activity
GO:0003723 IEA RNA binding
GO:0005634 ISO nucleus
GO:0005682 IEA U5 snRNP
GO:0006403 IEA RNA localization
GO:0016020 IEA membrane
GO:0043021 IEA ribonucleoprotein complex binding
GO:0044822 IEA poly(A) RNA binding
GO:0045944 ISO positive regulation of transcription from RNA polymerase II promoter
GO:0046540 IEA U4/U6 x U5 tri-snRNP complex
GO:0050681 ISO androgen receptor binding
GO:0071001 IEA U4/U6 snRNP
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000266079 PRPF6-001 protein_coding Homo_sapiens 0 3458

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