C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PRP6 pre-mRNA splicing factor 6 homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002455 Prpf6 10090 + 2:181591868-181655660 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000002529 Prpf6-201 181601319-181655660 protein_coding
  ENSMUST00000132714 Prpf6-002 181591868-181616076 protein_coding
  ENSMUST00000136481 Prpf6-001 181601316-181655651 protein_coding
  ENSMUST00000139955 Prpf6-003 181601373-181641425 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002529ENSMUST00000132714ENSMUST00000136481ENSMUST00000139955
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002529 3.339±1.81 N/A N/A N/A 1.030±0.00 1.367±0.00 0.975±0.11 2.032±0.79 N/A 1.230±0.00 N/A 13.612±6.36 N/A 2.068±0.16
ENSMUST00000132714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 99.956±0.00 126.362±0.00
ENSMUST00000136481 9.385±0.65 7.811±1.53 15.554±0.76 25.764±9.48 9.201±1.66 9.115±1.15 6.898±0.76 10.190±0.88 11.694±3.23 12.341±1.55 10.749±0.82 22.926±16.50 29.997±9.09 14.683±7.67
ENSMUST00000139955 N/A 1.374±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.021±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004F5 CIL_0004F5_0002 CGP 2:181569149-181592803

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003713 ISO transcription coactivator activity
GO:0003723 IEA RNA binding
GO:0005634 ISO nucleus
GO:0005682 IEA U5 snRNP
GO:0006403 IEA RNA localization
GO:0016020 IEA membrane
GO:0043021 IEA ribonucleoprotein complex binding
GO:0044822 IEA poly(A) RNA binding
GO:0045944 ISO positive regulation of transcription from RNA polymerase II promoter
GO:0046540 IEA U4/U6 x U5 tri-snRNP complex
GO:0050681 ISO androgen receptor binding
GO:0071001 IEA U4/U6 snRNP
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014500 pre-mRNA processing factor 6 protein_coding Danio_rerio
ENSDARG00000091367 prpf6 PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000101161 PRPF6 pre-mRNA processing factor 6 protein_coding Homo_sapiens

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